Variant report

Variant	rs11188578
Chromosome Location	chr10:97823839-97823840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97821278..97823934-chr10:97846711..97850876,3	K562	blood:
2	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
3	chr10:97822214..97824022-chr10:97848462..97851051,4	MCF-7	breast:
4	chr10:97821145..97824482-chr10:97888850..97891356,3	MCF-7	breast:
5	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10458746	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1047370	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10509699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10786262	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10882703	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10882714	0.89[ASN][1000 genomes]
rs10882716	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs10882717	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11188549	0.86[EUR][1000 genomes]
rs11188550	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11188554	1.00[EUR][1000 genomes]
rs11188557	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11188566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188580	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188581	0.96[ASN][1000 genomes]
rs11188582	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188583	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188593	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188594	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs11188595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188598	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188608	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188623	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188639	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11188657	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap]
rs11814171	1.00[EUR][1000 genomes]
rs12219508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12221239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12414081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12569991	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12570955	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12572217	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1336455	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17111275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2085492	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3814226	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4145226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72474879	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7898901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7903619	1.00[YRI][hapmap]
rs7913418	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs915506	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
2	chr10:97804800-97824200	Weak transcription	Small Intestine	intestine
3	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:97816400-97831400	Weak transcription	Right Atrium	heart
5	chr10:97818000-97824400	Weak transcription	Lung	lung
6	chr10:97818000-97824800	Weak transcription	Fetal Kidney	kidney
7	chr10:97818000-97826200	Weak transcription	Gastric	stomach
8	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
10	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
11	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
12	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
13	chr10:97818200-97826800	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:97818200-97832800	Weak transcription	HMEC	breast
15	chr10:97818200-97833200	Weak transcription	NHEK	skin
16	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
18	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
20	chr10:97818600-97825600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:97819200-97824800	Weak transcription	Fetal Lung	lung
22	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:97819400-97824800	Weak transcription	NH-A	brain
24	chr10:97819400-97833400	Weak transcription	NHLF	lung
25	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:97819600-97824200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:97819600-97825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:97819600-97828600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:97819600-97832600	Weak transcription	NHDF-Ad	bronchial
30	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:97819600-97848000	Weak transcription	HepG2	liver
32	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:97819600-97849400	Weak transcription	Ovary	ovary
36	chr10:97819800-97824200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
38	chr10:97819800-97841400	Weak transcription	Liver	Liver
39	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:97820200-97833400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
45	chr10:97821000-97833200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:97821400-97824600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:97821600-97825800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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