Variant report

Variant	rs11188566
Chromosome Location	chr10:97798383-97798384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97798115..97801536-chr10:97801750..97804794,4	MCF-7	breast:
2	chr10:97793581..97795373-chr10:97798267..97800103,2	K562	blood:
3	chr10:97797859..97799974-chr10:97801220..97803760,3	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10458746	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1047370	0.82[ASN][1000 genomes]
rs10509699	0.97[ASN][1000 genomes]
rs10786262	0.84[ASN][1000 genomes]
rs10882703	0.86[EUR][1000 genomes]
rs10882714	0.83[ASN][1000 genomes]
rs10882716	0.81[ASN][1000 genomes]
rs10882717	0.81[ASN][1000 genomes]
rs11188549	0.86[EUR][1000 genomes]
rs11188550	0.86[EUR][1000 genomes]
rs11188554	1.00[EUR][1000 genomes]
rs11188557	1.00[EUR][1000 genomes]
rs11188572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188580	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188581	0.90[ASN][1000 genomes]
rs11188582	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188583	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188593	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188595	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188598	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188599	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188603	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188608	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188615	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188616	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188623	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188639	0.80[ASN][1000 genomes]
rs11814171	1.00[EUR][1000 genomes]
rs12219508	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12414081	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12569991	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12570955	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572217	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336455	0.81[ASN][1000 genomes]
rs17111275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1974251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2085492	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3814226	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4145226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72474879	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7898901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7913418	0.87[ASN][1000 genomes]
rs915506	0.87[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97797800-97802600	Weak transcription	Small Intestine	intestine
2	chr10:97798000-97799400	Enhancers	HUVEC	blood vessel

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