Variant report

Variant	rs12572217
Chromosome Location	chr10:97880228-97880229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97879433..97880940-chr10:97908059..97910895,2	MCF-7	breast:
2	chr10:97848457..97851252-chr10:97877480..97882183,4	MCF-7	breast:
3	chr10:97874266..97876625-chr10:97879837..97881819,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-5	chr10:97880139-97880531	expReg_chr10_6497_+

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10458746	0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1047370	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10509699	0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10786262	0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10882703	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10882714	0.85[ASN][1000 genomes]
rs10882716	0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10882717	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11188549	0.86[EUR][1000 genomes]
rs11188550	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188554	1.00[EUR][1000 genomes]
rs11188557	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11188566	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188572	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188578	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188580	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188581	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11188582	0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188593	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188594	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11188595	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188598	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188599	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188603	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188615	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188616	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188623	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188639	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188657	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes]
rs11814171	1.00[EUR][1000 genomes]
rs12219508	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12221239	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12414081	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12569991	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12570955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336455	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs17111275	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1974251	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2085492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814226	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4145226	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72474879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898901	1.00[EUR][1000 genomes]
rs7913418	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs915506	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97879000-97883200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97879200-97883600	Weak transcription	HepG2	liver
3	chr10:97879400-97883800	Weak transcription	Rectal Mucosa Donor 31	rectum

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