Variant report

Variant	rs1336455
Chromosome Location	chr10:97838474-97838475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97824438..97827083-chr10:97837081..97839051,2	K562	blood:
2	chr10:97838210..97840381-chr10:97845009..97847599,2	K562	blood:
3	chr10:97837927..97845903-chr10:97847797..97851072,11	K562	blood:
4	chr10:97833877..97835532-chr10:97836303..97838930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10458746	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1047370	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10509699	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10509703	0.86[CEU][hapmap]
rs10786261	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs10786262	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882714	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882716	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882717	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882718	0.86[CEU][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882728	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs11188566	0.81[ASN][1000 genomes]
rs11188572	0.83[ASN][1000 genomes]
rs11188575	0.86[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188578	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11188579	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188580	0.86[ASN][1000 genomes]
rs11188581	0.84[ASN][1000 genomes]
rs11188582	0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs11188583	0.90[ASN][1000 genomes]
rs11188593	0.90[ASN][1000 genomes]
rs11188594	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188595	0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11188596	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188598	0.89[ASN][1000 genomes]
rs11188599	0.90[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs11188601	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188603	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188604	1.00[ASW][hapmap];0.86[CEU][hapmap];0.92[MEX][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188606	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11188608	0.88[ASN][1000 genomes]
rs11188613	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188615	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188616	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11188618	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188623	0.87[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11188626	0.82[EUR][1000 genomes]
rs11188627	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs11188635	0.86[CEU][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes]
rs11188639	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11188656	0.86[CEU][hapmap]
rs11188657	0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11597197	0.81[EUR][1000 genomes]
rs11814327	0.86[CEU][hapmap]
rs12219508	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12221239	0.83[ASN][1000 genomes]
rs12354762	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12359842	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12414081	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12569991	0.90[ASN][1000 genomes]
rs12570955	0.86[ASN][1000 genomes]
rs12572217	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs17111275	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1889921	0.84[ASN][1000 genomes]
rs1974251	0.80[ASN][1000 genomes]
rs2039616	1.00[ASW][hapmap];0.81[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2085492	0.88[ASN][1000 genomes]
rs3814226	0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3961944	0.86[CEU][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4145226	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs61858613	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs713070	0.86[CEU][hapmap];0.83[MEX][hapmap];0.82[EUR][1000 genomes]
rs72474879	0.88[ASN][1000 genomes]
rs7913418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs915506	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
2	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
3	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
4	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
5	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
8	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:97819600-97848000	Weak transcription	HepG2	liver
12	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:97819600-97849400	Weak transcription	Ovary	ovary
16	chr10:97819800-97841400	Weak transcription	Liver	Liver
17	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
21	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:97822600-97841800	Weak transcription	Adipose Nuclei	Adipose
27	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
29	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
32	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
36	chr10:97825800-97848200	Weak transcription	Fetal Intestine Small	intestine
37	chr10:97833800-97841400	Weak transcription	Primary T cells from cord blood	blood
38	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:97834000-97849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:97834000-97849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:97834600-97840200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:97834600-97849000	Weak transcription	HSMMtube	muscle
43	chr10:97834800-97847600	Weak transcription	Dnd41	blood
44	chr10:97835000-97849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:97836400-97849200	Weak transcription	Thymus	Thymus
46	chr10:97838000-97849000	Weak transcription	Brain Germinal Matrix	brain
47	chr10:97838000-97849200	Weak transcription	Fetal Brain Male	brain
48	chr10:97838400-97849000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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