Variant report

Variant	rs11188656
Chromosome Location	chr10:97949572-97949573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97888142..97890161-chr10:97948497..97950292,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BLNK-2	chr10:97949122-97949975	NONHSAT015805

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1047370	0.81[CEU][hapmap]
rs10491069	0.88[ASN][1000 genomes]
rs10491070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10509700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10786261	0.90[CEU][hapmap]
rs10786262	0.86[CEU][hapmap]
rs10882716	0.91[CEU][hapmap]
rs10882717	0.91[CEU][hapmap]
rs10882718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs10882723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882743	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188594	0.91[CEU][hapmap]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11188604	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188606	0.83[AFR][1000 genomes]
rs11188613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs11188618	0.88[AFR][1000 genomes]
rs11188622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188626	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188631	1.00[CHB][hapmap]
rs11188635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11188661	0.80[EUR][1000 genomes]
rs11188662	0.80[AMR][1000 genomes]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap]
rs11594595	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11597197	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11598546	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11598837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11599170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11814327	1.00[CEU][hapmap]
rs12354644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12359842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs12761705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1336455	0.86[CEU][hapmap]
rs2039616	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2168733	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3961944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs61858613	0.83[AFR][1000 genomes]
rs713070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7896077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7913418	0.86[CEU][hapmap]
rs915506	0.86[CEU][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97947000-97950000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97947400-97949600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
5	chr10:97947800-97949600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:97947800-97949800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
8	chr10:97948200-97963600	Weak transcription	Gastric	stomach
9	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:97948400-97957000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
14	chr10:97948800-97949800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:97948800-97959200	Weak transcription	Spleen	Spleen
16	chr10:97949200-97949600	Weak transcription	Liver	Liver
17	chr10:97949400-97952000	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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