Variant report

Variant	rs11598837
Chromosome Location	chr10:97927590-97927591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97924295..97926346-chr10:97927012..97928959,2	MCF-7	breast:
2	chr10:97888766..97890396-chr10:97927526..97930432,2	K562	blood:
3	chr10:97920196..97922493-chr10:97925714..97928075,3	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10491070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509695	1.00[JPT][hapmap]
rs10509700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10882718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882723	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188575	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11188606	0.88[ASN][1000 genomes]
rs11188613	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11188618	0.94[ASN][1000 genomes]
rs11188622	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188626	0.83[ASN][1000 genomes]
rs11188627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188631	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188632	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11591374	0.94[YRI][hapmap]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596126	0.94[YRI][hapmap]
rs11597197	0.94[ASN][1000 genomes]
rs11598546	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11599170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11599662	0.95[YRI][hapmap]
rs12354644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768772	0.95[YRI][hapmap]
rs12771933	0.94[YRI][hapmap]
rs12778345	0.94[YRI][hapmap]
rs17382898	1.00[JPT][hapmap]
rs17383738	0.83[YRI][hapmap]
rs2039616	1.00[CHB][hapmap]
rs2125060	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4344425	1.00[JPT][hapmap]
rs60450792	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7081169	0.85[YRI][hapmap]
rs7096164	0.94[YRI][hapmap]
rs713070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7896077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916068	1.00[YRI][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
2	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
4	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97918800-97928000	Weak transcription	A549	lung
6	chr10:97918800-97929400	Weak transcription	HepG2	liver
7	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:97921800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:97922000-97927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:97922200-97927600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:97924200-97927800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:97926800-97928400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:97927400-97928600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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