Variant report

Variant	rs2125060
Chromosome Location	chr10:97879634-97879635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97879433..97880940-chr10:97908059..97910895,2	MCF-7	breast:
2	chr10:97848457..97851252-chr10:97877480..97882183,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10491070	0.81[EUR][1000 genomes]
rs10509700	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509701	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509703	0.94[ASN][1000 genomes]
rs10882723	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882728	0.94[ASN][1000 genomes]
rs11188604	0.82[ASN][1000 genomes]
rs11188606	0.88[ASN][1000 genomes]
rs11188613	0.88[ASN][1000 genomes]
rs11188618	0.94[ASN][1000 genomes]
rs11188622	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188626	0.83[ASN][1000 genomes]
rs11188627	0.94[ASN][1000 genomes]
rs11188631	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188632	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188635	0.94[ASN][1000 genomes]
rs11593049	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597197	0.94[ASN][1000 genomes]
rs11598546	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598837	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599170	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12354644	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	0.88[ASN][1000 genomes]
rs12761705	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60450792	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs713070	0.94[ASN][1000 genomes]
rs7896077	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97879000-97883200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97879200-97883600	Weak transcription	HepG2	liver
3	chr10:97879400-97883800	Weak transcription	Rectal Mucosa Donor 31	rectum

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