Variant report

Variant	rs11188632
Chromosome Location	chr10:97911858-97911859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97911843-97912023	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97889731..97891560-chr10:97911556..97915285,3	K562	blood:
2	chr10:97802573..97805014-chr10:97910795..97914340,3	K562	blood:
3	chr10:97910420..97912683-chr10:97924000..97927291,3	K562	blood:
4	chr10:97906115..97908290-chr10:97911726..97914595,2	K562	blood:

Variant related genes	Relation type
ZNF518A	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10491070	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509700	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509701	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509703	0.94[ASN][1000 genomes]
rs10882723	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882728	0.94[ASN][1000 genomes]
rs11188604	0.82[ASN][1000 genomes]
rs11188606	0.88[ASN][1000 genomes]
rs11188613	0.88[ASN][1000 genomes]
rs11188618	0.94[ASN][1000 genomes]
rs11188622	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188626	0.83[ASN][1000 genomes]
rs11188627	0.94[ASN][1000 genomes]
rs11188631	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188635	0.94[ASN][1000 genomes]
rs11593049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597197	0.94[ASN][1000 genomes]
rs11598546	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598837	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12354644	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	0.88[ASN][1000 genomes]
rs12761705	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125060	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60450792	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs713070	0.94[ASN][1000 genomes]
rs7896077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
2	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
4	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
6	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:97891400-97918200	Weak transcription	NHLF	lung
10	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
11	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
12	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:97895200-97917600	Weak transcription	NH-A	brain
16	chr10:97897800-97916600	Weak transcription	HMEC	breast
17	chr10:97900400-97916400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:97902600-97912800	Weak transcription	Osteobl	bone
19	chr10:97903000-97912600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:97903600-97920200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr10:97903800-97916200	Weak transcription	HUVEC	blood vessel
23	chr10:97904000-97918800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:97904200-97912200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:97904600-97912200	Weak transcription	Fetal Brain Female	brain
26	chr10:97906000-97914400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:97908600-97913400	Weak transcription	Hela-S3	cervix
28	chr10:97909000-97918800	Strong transcription	HepG2	liver
29	chr10:97909400-97914800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:97910000-97917800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:97910600-97914200	Strong transcription	Fetal Intestine Small	intestine
32	chr10:97910600-97917000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:97910600-97918200	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr10:97910600-97918400	Strong transcription	Liver	Liver
35	chr10:97910600-97918600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr10:97910600-97918600	Strong transcription	Left Ventricle	heart
37	chr10:97910600-97919200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:97910600-97919800	Strong transcription	Dnd41	blood
39	chr10:97910800-97912400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:97910800-97912600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:97910800-97914800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:97910800-97915000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:97910800-97917200	Strong transcription	Primary T cells from cord blood	blood
44	chr10:97910800-97918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:97910800-97918800	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:97910800-97918800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:97910800-97919200	Strong transcription	Fetal Intestine Large	intestine
48	chr10:97910800-97920200	Strong transcription	Fetal Muscle Leg	muscle
49	chr10:97910800-97922200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:97911000-97912400	Strong transcription	Right Ventricle	heart

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