Variant report

Variant	rs11593049
Chromosome Location	chr10:97907733-97907734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97847873..97850312-chr10:97907451..97910548,3	MCF-7	breast:
2	chr10:97906115..97908290-chr10:97911726..97914595,2	K562	blood:
3	chr10:97888575..97891553-chr10:97906661..97910426,5	MCF-7	breast:
4	chr10:97905460..97907764-chr10:97921809..97923534,2	K562	blood:
5	chr10:97899843..97903652-chr10:97906126..97909504,4	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10491070	1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509700	1.00[CHB][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509701	1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509703	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10882718	1.00[CHB][hapmap]
rs10882723	1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882728	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11188575	1.00[CHB][hapmap]
rs11188596	1.00[CHB][hapmap]
rs11188604	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11188606	0.88[ASN][1000 genomes]
rs11188613	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11188618	0.94[ASN][1000 genomes]
rs11188622	1.00[CHB][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188626	0.83[ASN][1000 genomes]
rs11188627	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11188631	1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188635	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11188656	1.00[CHB][hapmap]
rs11595809	1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597197	0.94[ASN][1000 genomes]
rs11598546	1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598837	1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599170	1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12354644	1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs12761705	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039616	1.00[CHB][hapmap]
rs2125060	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961944	1.00[CHB][hapmap]
rs60450792	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs713070	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7896077	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
6	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
8	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
11	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
12	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:97891400-97918200	Weak transcription	NHLF	lung
15	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
17	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
18	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97892400-97909600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:97892600-97907800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:97892600-97909800	Strong transcription	Liver	Liver
23	chr10:97892800-97907800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr10:97892800-97909400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:97893000-97907800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:97893000-97907800	Strong transcription	Primary B cells from cord blood	blood
28	chr10:97893000-97908400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:97893000-97909400	Strong transcription	Fetal Intestine Large	intestine
30	chr10:97893000-97909800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr10:97893200-97907800	Strong transcription	Fetal Thymus	thymus
32	chr10:97893400-97907800	Strong transcription	Dnd41	blood
33	chr10:97894600-97908400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:97895000-97911000	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:97895000-97911200	Weak transcription	Lung	lung
36	chr10:97895000-97911400	Weak transcription	Brain Angular Gyrus	brain
37	chr10:97895200-97911200	Weak transcription	Pancreas	Pancrea
38	chr10:97895200-97911600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:97895200-97917600	Weak transcription	NH-A	brain
40	chr10:97895800-97911200	Weak transcription	NHDF-Ad	bronchial
41	chr10:97895800-97911800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:97896800-97907800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:97897000-97911000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:97897000-97911000	Weak transcription	Ovary	ovary
45	chr10:97897000-97911200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:97897400-97911800	Weak transcription	NHEK	skin
47	chr10:97897800-97911200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:97897800-97916600	Weak transcription	HMEC	breast
49	chr10:97898000-97911200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:97898000-97911200	Weak transcription	HSMM	muscle

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