Variant report

Variant	rs2039616
Chromosome Location	chr10:97824968-97824969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97824893..97827891-chr10:97848328..97851405,4	K562	blood:
2	chr10:97824733..97827664-chr10:97849419..97851084,3	K562	blood:
3	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
4	chr10:97824438..97827083-chr10:97837081..97839051,2	K562	blood:
5	chr10:97802360..97806316-chr10:97824966..97827098,4	K562	blood:
6	chr10:97824847..97827306-chr10:97828973..97831414,3	K562	blood:
7	chr10:97824314..97827004-chr10:97832805..97834413,3	K562	blood:
8	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1047370	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10491070	1.00[CHB][hapmap]
rs10509700	1.00[CHB][hapmap]
rs10509701	1.00[CHB][hapmap]
rs10509703	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs10786262	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882709	0.88[ASN][1000 genomes]
rs10882714	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882716	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882717	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882718	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882723	1.00[CHB][hapmap]
rs10882728	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188552	0.88[ASN][1000 genomes]
rs11188575	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188579	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188594	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188596	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188601	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188604	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188606	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188613	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188618	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188622	1.00[CHB][hapmap]
rs11188626	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188627	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188631	1.00[CHB][hapmap]
rs11188635	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188656	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11593049	1.00[CHB][hapmap]
rs11595809	1.00[CHB][hapmap]
rs11597197	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11598546	1.00[CHB][hapmap]
rs11598837	1.00[CHB][hapmap]
rs11599170	1.00[CHB][hapmap]
rs11814327	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs12354644	1.00[CHB][hapmap]
rs12354762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12761705	1.00[CHB][hapmap]
rs1336455	1.00[ASW][hapmap];0.81[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3961944	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61858613	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713070	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7896077	1.00[CHB][hapmap]
rs7913418	0.81[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs915506	1.00[ASW][hapmap];0.81[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
2	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:97816400-97831400	Weak transcription	Right Atrium	heart
4	chr10:97818000-97826200	Weak transcription	Gastric	stomach
5	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
7	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
8	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
9	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
10	chr10:97818200-97826800	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:97818200-97832800	Weak transcription	HMEC	breast
12	chr10:97818200-97833200	Weak transcription	NHEK	skin
13	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
15	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
17	chr10:97818600-97825600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:97819400-97833400	Weak transcription	NHLF	lung
20	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:97819600-97825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:97819600-97828600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97819600-97832600	Weak transcription	NHDF-Ad	bronchial
24	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:97819600-97848000	Weak transcription	HepG2	liver
26	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:97819600-97849400	Weak transcription	Ovary	ovary
30	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
31	chr10:97819800-97841400	Weak transcription	Liver	Liver
32	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:97820200-97833400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
38	chr10:97821000-97833200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:97821600-97825800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:97822000-97825600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr10:97822000-97833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:97822200-97825800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:97822200-97830200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:97822400-97830000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:97822400-97830400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:97822400-97830400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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