Variant report

Variant	rs11188601
Chromosome Location	chr10:97856899-97856900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97848508..97851533-chr10:97856361..97858896,3	MCF-7	breast:
2	chr10:97856059..97858153-chr10:97870361..97872310,2	K562	blood:
3	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
4	chr10:97856259..97858291-chr10:97868440..97871393,2	K562	blood:
5	chr10:97801242..97803084-chr10:97856272..97858954,2	MCF-7	breast:
6	chr10:97848249..97852807-chr10:97853294..97857054,6	MCF-7	breast:
7	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1047370	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10509703	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786262	0.86[EUR][1000 genomes]
rs10882709	0.94[ASN][1000 genomes]
rs10882714	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882716	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882717	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882718	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882728	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188552	0.94[ASN][1000 genomes]
rs11188575	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188579	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188594	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11188596	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188606	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188613	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188618	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188626	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188627	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188635	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11597197	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12354762	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359842	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1336455	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2039616	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3961944	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858613	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713070	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7913418	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs915506	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97854600-97859800	Weak transcription	K562	blood
2	chr10:97856400-97857600	Enhancers	Primary neutrophils fromperipheralblood	blood

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