Variant report

Variant	rs61858613
Chromosome Location	chr10:97806333-97806334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97806214-97806399	HepG2	liver:	n/a	n/a
2	POLR2A	chr10:97806246-97806436	ProgFib	skin:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97803734..97806722-chr10:97959272..97960926,2	K562	blood:
3	chr10:97803146..97804768-chr10:97804855..97808048,3	K562	blood:
4	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
5	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
6	chr10:97805584..97806458-chr12:103575603..103576420,2	MCF-7	breast:
7	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
8	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
9	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1047370	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10509703	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10786262	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882709	0.88[ASN][1000 genomes]
rs10882714	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10882716	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882717	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882718	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882728	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188552	0.88[ASN][1000 genomes]
rs11188575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188579	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188594	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188596	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188601	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188604	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188606	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188613	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188618	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188626	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188627	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188635	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188656	0.83[AFR][1000 genomes]
rs11597197	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11814327	0.81[EUR][1000 genomes]
rs12354762	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1336455	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2039616	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961944	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713070	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7913418	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs915506	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804400-97816600	Weak transcription	Esophagus	oesophagus
2	chr10:97804600-97806800	Weak transcription	Pancreas	Pancrea
3	chr10:97804600-97806800	Weak transcription	Spleen	Spleen
4	chr10:97804600-97810000	Weak transcription	Left Ventricle	heart
5	chr10:97804600-97810000	Weak transcription	Lung	lung
6	chr10:97804600-97816600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:97804600-97816600	Weak transcription	Placenta	Placenta
8	chr10:97804600-97816600	Weak transcription	Gastric	stomach
9	chr10:97804600-97816800	Weak transcription	Ovary	ovary
10	chr10:97804600-97817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:97804600-97817000	Weak transcription	Aorta	Aorta
12	chr10:97804600-97817000	Weak transcription	Psoas Muscle	Psoas
13	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
14	chr10:97804800-97806800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:97804800-97807200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:97804800-97810000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:97804800-97810600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:97804800-97811600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:97804800-97816400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:97804800-97824200	Weak transcription	Small Intestine	intestine
21	chr10:97805000-97806400	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:97805000-97806600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:97805000-97806600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:97805000-97807400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr10:97805000-97809800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:97805000-97810000	Weak transcription	Primary B cells from cord blood	blood
27	chr10:97805000-97810000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:97805000-97810000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:97805000-97810200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:97805000-97813200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:97805000-97816400	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:97805000-97816600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:97805000-97816600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:97805000-97816600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:97805000-97816600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:97805000-97816600	Weak transcription	Fetal Stomach	stomach
37	chr10:97805000-97816600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:97805000-97816800	Weak transcription	Brain Angular Gyrus	brain
39	chr10:97805000-97816800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:97805000-97816800	Weak transcription	Colonic Mucosa	Colon
41	chr10:97805000-97816800	Weak transcription	Right Ventricle	heart
42	chr10:97805000-97816800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr10:97805000-97816800	Weak transcription	Osteobl	bone
44	chr10:97805000-97817000	Weak transcription	Brain Substantia Nigra	brain
45	chr10:97805000-97817000	Weak transcription	Fetal Intestine Small	intestine
46	chr10:97805000-97817400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:97805000-97817600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:97805200-97806400	Enhancers	Fetal Brain Male	brain
50	chr10:97805200-97806800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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