Variant report

Variant	rs11188618
Chromosome Location	chr10:97877900-97877901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97875753..97878264-chr10:97885533..97887892,2	MCF-7	breast:
2	chr10:97848457..97851252-chr10:97877480..97882183,4	MCF-7	breast:
3	chr10:97871710..97874019-chr10:97877046..97879264,2	MCF-7	breast:
4	chr10:97871595..97874047-chr10:97875206..97878090,4	K562	blood:
5	chr10:97863872..97865419-chr10:97876280..97878249,2	K562	blood:
6	chr10:97871721..97873820-chr10:97875416..97878062,2	K562	blood:
7	chr10:97875384..97878140-chr10:97888337..97891215,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000200728	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1047370	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10509700	0.94[ASN][1000 genomes]
rs10509701	0.94[ASN][1000 genomes]
rs10509703	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786262	0.81[EUR][1000 genomes]
rs10882714	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882716	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882717	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882723	0.94[ASN][1000 genomes]
rs10882728	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188575	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188579	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188594	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188596	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188601	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188604	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188606	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188622	0.94[ASN][1000 genomes]
rs11188626	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188627	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188631	0.94[ASN][1000 genomes]
rs11188632	0.94[ASN][1000 genomes]
rs11188635	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188656	0.88[AFR][1000 genomes]
rs11593049	0.94[ASN][1000 genomes]
rs11594595	0.83[AFR][1000 genomes]
rs11595809	0.94[ASN][1000 genomes]
rs11597197	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	0.88[ASN][1000 genomes]
rs11598837	0.94[ASN][1000 genomes]
rs12354644	0.94[ASN][1000 genomes]
rs12354762	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12359842	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12761705	0.94[ASN][1000 genomes]
rs1336455	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2039616	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2125060	0.94[ASN][1000 genomes]
rs3961944	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61858613	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs713070	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896077	0.94[ASN][1000 genomes]
rs7913418	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs915506	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97876600-97878200	Weak transcription	HepG2	liver

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