Variant report

Variant	rs3961944
Chromosome Location	chr10:97852357-97852358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
2	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
3	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
4	chr10:97848458..97851464-chr10:97851557..97854751,6	MCF-7	breast:
5	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
6	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1047370	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10491070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs10509695	1.00[JPT][hapmap]
rs10509700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786247	1.00[JPT][hapmap]
rs10786261	0.90[CEU][hapmap]
rs10786262	0.86[CEU][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes]
rs10882709	0.94[ASN][1000 genomes]
rs10882714	0.83[AMR][1000 genomes]
rs10882716	0.91[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10882717	0.91[CEU][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882718	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188531	1.00[JPT][hapmap]
rs11188552	0.94[ASN][1000 genomes]
rs11188575	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188579	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188594	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188601	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188604	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188606	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188618	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188626	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188631	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188635	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap]
rs11595809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11597197	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11598546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs11598837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11599170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11814327	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs12354644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12354762	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359343	1.00[JPT][hapmap]
rs12359842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs1336455	0.86[CEU][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17382898	1.00[JPT][hapmap]
rs2039616	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4344425	1.00[JPT][hapmap]
rs61858613	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713070	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7895056	1.00[JPT][hapmap]
rs7896077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs7913418	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs915506	0.86[CEU][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97850600-97852600	Enhancers	HepG2	liver
2	chr10:97852200-97852400	Enhancers	K562	blood

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