Variant report

Variant	rs10786261
Chromosome Location	chr10:97781028-97781029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97777689..97783074-chr10:97800891..97805801,6	MCF-7	breast:
2	chr10:97774224..97779073-chr10:97779933..97783728,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97778477-97781325	ENSG00000226688.1

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1047370	0.90[CEU][hapmap]
rs10509703	0.90[CEU][hapmap]
rs10748652	0.88[ASN][1000 genomes]
rs10748653	0.85[ASN][1000 genomes]
rs10748656	0.82[ASN][1000 genomes]
rs10786258	0.85[ASN][1000 genomes]
rs10786259	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10786260	0.85[ASN][1000 genomes]
rs10786262	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs10882710	0.91[ASN][1000 genomes]
rs10882716	1.00[CEU][hapmap]
rs10882717	1.00[CEU][hapmap]
rs10882718	0.90[CEU][hapmap]
rs10882728	0.89[CEU][hapmap]
rs11188575	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs11188594	1.00[CEU][hapmap]
rs11188613	0.88[CEU][hapmap]
rs11188627	0.90[CEU][hapmap]
rs11188635	0.90[CEU][hapmap]
rs11188656	0.90[CEU][hapmap]
rs11814327	0.90[CEU][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12359842	0.90[CEU][hapmap]
rs1336455	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs1414921	0.85[ASN][1000 genomes]
rs1414922	0.85[ASN][1000 genomes]
rs2095591	0.99[ASN][1000 genomes]
rs3748224	0.88[ASN][1000 genomes]
rs3961944	0.90[CEU][hapmap]
rs3961945	0.85[ASN][1000 genomes]
rs4145209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4918984	0.85[ASN][1000 genomes]
rs6584044	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6584045	0.93[ASN][1000 genomes]
rs6584046	0.93[ASN][1000 genomes]
rs7085712	0.85[ASN][1000 genomes]
rs7096743	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs713070	0.90[CEU][hapmap]
rs7913418	0.95[CEU][hapmap]
rs7913835	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7919099	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs915506	0.95[CEU][hapmap];0.87[TSI][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
2	chr10:97774600-97782200	Weak transcription	K562	blood
3	chr10:97777400-97782200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97777400-97782400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:97777400-97787000	Weak transcription	Left Ventricle	heart

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