Variant report

Variant	rs10786260
Chromosome Location	chr10:97777404-97777405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97776829..97779555-chr10:97889274..97891059,2	K562	blood:
2	chr10:97776713..97777777-chr10:98099654..98100263,3	K562	blood:
3	chr10:97776929..97777676-chr10:98052758..98053580,3	MCF-7	breast:
4	chr10:97776162..97777909-chr10:97781246..97782872,2	MCF-7	breast:
5	chr10:97776677..97777667-chr10:97989033..97989541,2	K562	blood:
6	chr10:97776720..97777641-chr10:98094417..98094947,2	MCF-7	breast:
7	chr10:97776596..97777595-chr10:98052760..98053742,4	K562	blood:
8	chr10:97774224..97779073-chr10:97779933..97783728,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1023331	0.88[CEU][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1029215	0.84[CEU][hapmap]
rs10736097	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10736098	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs10748652	0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10748653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748656	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10748659	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10786257	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786259	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786261	0.85[ASN][1000 genomes]
rs10882710	0.89[AFR][1000 genomes]
rs1172943	0.88[CEU][hapmap];0.88[TSI][hapmap]
rs1414919	0.88[CEU][hapmap]
rs1414921	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414922	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095591	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2901892	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2901894	0.82[EUR][1000 genomes]
rs3748224	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs3762090	0.81[CEU][hapmap]
rs3961945	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145209	0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs4918984	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584044	0.88[ASW][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs6584045	0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6584046	0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6584048	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7085712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096743	0.88[ASW][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs7913835	0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs7919099	0.88[ASW][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10786260	GPR120	cis	cerebellum	SCAN
rs10786260	CRTAC1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
2	chr10:97774600-97782200	Weak transcription	K562	blood
3	chr10:97775800-97777600	Enhancers	Fetal Stomach	stomach
4	chr10:97777400-97782200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:97777400-97782400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:97777400-97787000	Weak transcription	Left Ventricle	heart

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