Variant report

Variant	rs10736098
Chromosome Location	chr10:97780905-97780906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1023331	0.91[CEU][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs1029215	0.88[CEU][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs10732776	0.81[EUR][1000 genomes]
rs10748653	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10748656	0.83[EUR][1000 genomes]
rs10786258	0.85[EUR][1000 genomes]
rs10786259	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs10786260	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs1414919	0.92[CEU][hapmap];0.95[TSI][hapmap]
rs1414921	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs1414922	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2446023	0.82[ASW][hapmap];0.88[CEU][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes]
rs2901892	0.81[EUR][1000 genomes]
rs3762090	0.83[CEU][hapmap];0.82[TSI][hapmap]
rs3961945	0.87[EUR][1000 genomes]
rs4918986	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs6584048	0.97[EUR][1000 genomes]
rs7084542	0.92[TSI][hapmap]
rs7085712	0.80[CEU][hapmap];0.85[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10736098	CRTAC1	cis	parietal	SCAN
rs10736098	GPR120	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
2	chr10:97774600-97782200	Weak transcription	K562	blood
3	chr10:97777400-97782200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97777400-97782400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:97777400-97787000	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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