Variant report

Variant	rs4918986
Chromosome Location	chr10:97832518-97832519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97829922..97834594-chr10:97848296..97851749,4	K562	blood:
2	chr10:97802201..97804094-chr10:97831164..97833365,2	K562	blood:
3	chr10:97831238..97834189-chr10:97888869..97893291,4	K562	blood:
4	chr10:97803319..97804941-chr10:97831470..97833697,2	MCF-7	breast:
5	chr10:97830567..97832820-chr10:97844273..97848147,3	K562	blood:
6	chr10:97829963..97833632-chr10:97888619..97891681,4	K562	blood:
7	chr10:97830030..97833459-chr10:97848165..97850862,3	MCF-7	breast:
8	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
9	chr10:97831034..97837353-chr10:97838908..97844842,8	K562	blood:
10	chr10:97831211..97833750-chr10:97833757..97836431,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10736098	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs2446023	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4918986	C10orf12	cis	cerebellum	SCAN
rs4918986	CRTAC1	cis	parietal	SCAN
rs4918986	GPR120	cis	cerebellum	SCAN

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
3	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
4	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
5	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
6	chr10:97818200-97832800	Weak transcription	HMEC	breast
7	chr10:97818200-97833200	Weak transcription	NHEK	skin
8	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
12	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:97819400-97833400	Weak transcription	NHLF	lung
14	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:97819600-97832600	Weak transcription	NHDF-Ad	bronchial
16	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:97819600-97848000	Weak transcription	HepG2	liver
18	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:97819600-97849400	Weak transcription	Ovary	ovary
22	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
23	chr10:97819800-97841400	Weak transcription	Liver	Liver
24	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:97820200-97833400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
30	chr10:97821000-97833200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:97822000-97833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:97822400-97834600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:97822600-97832800	Weak transcription	Thymus	Thymus
40	chr10:97822600-97833000	Weak transcription	HSMM	muscle
41	chr10:97822600-97833400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:97822600-97833400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:97822600-97833400	Weak transcription	Fetal Thymus	thymus
44	chr10:97822600-97841800	Weak transcription	Adipose Nuclei	Adipose
45	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
47	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:97822800-97833800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach

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