Variant report

Variant	rs2446023
Chromosome Location	chr10:97893521-97893522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
2	chr10:97802289..97805313-chr10:97893029..97895743,3	MCF-7	breast:
3	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10128368	0.80[EUR][1000 genomes]
rs1023331	0.87[CEU][hapmap]
rs1029215	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs10509704	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10509706	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10736098	0.82[ASW][hapmap];0.88[CEU][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes]
rs10748659	0.84[CEU][hapmap]
rs10748660	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10882731	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs10882732	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs10882742	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs11188633	0.87[EUR][1000 genomes]
rs11188634	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs11188642	0.87[EUR][1000 genomes]
rs11188643	0.86[EUR][1000 genomes]
rs1172937	0.87[EUR][1000 genomes]
rs1172940	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs1172943	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs1172946	0.80[EUR][1000 genomes]
rs1172958	0.91[EUR][1000 genomes]
rs1172960	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs1172961	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs1172963	0.90[EUR][1000 genomes]
rs1177749	0.88[CEU][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs12766762	0.87[EUR][1000 genomes]
rs1414919	0.88[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs1414921	0.81[CEU][hapmap]
rs1414922	0.81[CEU][hapmap]
rs1764305	0.88[EUR][1000 genomes]
rs2484912	0.88[CEU][hapmap]
rs3748226	0.85[EUR][1000 genomes]
rs3762090	0.96[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs4918986	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7084542	0.91[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2446023	MYOF	cis	parietal	SCAN
rs2446023	GPR120	cis	cerebellum	SCAN
rs2446023	CRTAC1	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97894000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97890600-97894000	Weak transcription	Lung	lung
3	chr10:97890600-97911200	Weak transcription	Gastric	stomach
4	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
5	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
6	chr10:97890800-97893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:97890800-97893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:97890800-97894000	Weak transcription	Pancreas	Pancrea
9	chr10:97890800-97894600	Weak transcription	Left Ventricle	heart
10	chr10:97890800-97894600	Weak transcription	Ovary	ovary
11	chr10:97890800-97895600	Weak transcription	Hela-S3	cervix
12	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
14	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:97891000-97894600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:97891000-97896400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:97891000-97896600	Weak transcription	Aorta	Aorta
18	chr10:97891000-97906400	Weak transcription	Right Ventricle	heart
19	chr10:97891000-97906600	Weak transcription	Psoas Muscle	Psoas
20	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
21	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:97891200-97894000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:97891200-97894000	Weak transcription	Fetal Stomach	stomach
25	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
26	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
27	chr10:97891400-97893800	Weak transcription	Colonic Mucosa	Colon
28	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
29	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr10:97891400-97918200	Weak transcription	NHLF	lung
31	chr10:97891600-97893600	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:97891600-97893600	Weak transcription	Fetal Brain Female	brain
33	chr10:97891600-97894000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:97891600-97894600	Weak transcription	Brain Substantia Nigra	brain
35	chr10:97891600-97896400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:97891600-97896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:97891600-97896600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
40	chr10:97891800-97894200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:97891800-97894600	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:97891800-97895200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
44	chr10:97892000-97893800	Weak transcription	Thymus	Thymus
45	chr10:97892000-97894200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:97892000-97894200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:97892000-97895400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:97892000-97896200	Weak transcription	Fetal Intestine Small	intestine
49	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:97892200-97894000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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