Variant report

Variant	rs3748226
Chromosome Location	chr10:97922999-97923000
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97905460..97907764-chr10:97921809..97923534,2	K562	blood:
2	chr10:97922944..97925099-chr10:97927755..97929719,2	K562	blood:
3	chr10:97900100..97902878-chr10:97920561..97923291,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-1	chr10:97920102-97923508	ENSG00000177853

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10128368	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1029215	0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10509704	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10509706	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10732776	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10748660	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882742	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188564	0.85[JPT][hapmap]
rs11188574	0.85[JPT][hapmap]
rs11188633	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188643	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188655	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11188660	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1172937	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1172940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172943	0.83[EUR][1000 genomes]
rs1172946	0.83[EUR][1000 genomes]
rs1172958	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1172960	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1172961	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1172963	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1177749	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12766762	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12782206	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1414919	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17111316	0.85[JPT][hapmap]
rs1764305	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2446023	0.85[EUR][1000 genomes]
rs2484912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3762090	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7084542	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9783259	0.81[JPT][hapmap]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:97911000-97923000	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
7	chr10:97913000-97925400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:97914200-97924800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:97914200-97925600	Weak transcription	Fetal Stomach	stomach
10	chr10:97914200-97925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:97914200-97926200	Weak transcription	Pancreas	Pancrea
12	chr10:97915400-97923200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:97915400-97923400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:97917400-97923000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:97917600-97924800	Weak transcription	Small Intestine	intestine
17	chr10:97917600-97925200	Weak transcription	Fetal Brain Female	brain
18	chr10:97917600-97925800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:97918000-97923800	Weak transcription	HUVEC	blood vessel
20	chr10:97918000-97924200	Weak transcription	HSMM	muscle
21	chr10:97918000-97925400	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:97918200-97924600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:97918200-97925400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:97918200-97925800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:97918200-97925800	Weak transcription	Osteobl	bone
26	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
27	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:97918600-97925400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:97918600-97925600	Weak transcription	NHEK	skin
30	chr10:97918600-97925800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:97918600-97926200	Weak transcription	Left Ventricle	heart
32	chr10:97918600-97926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:97918800-97923600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:97918800-97925800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:97918800-97926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:97918800-97926600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:97918800-97928000	Weak transcription	A549	lung
38	chr10:97918800-97929400	Weak transcription	HepG2	liver
39	chr10:97919000-97925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:97919200-97925800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:97919400-97924400	Weak transcription	GM12878-XiMat	blood
42	chr10:97919400-97925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:97919400-97925000	Weak transcription	K562	blood
44	chr10:97919400-97925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:97919400-97927400	Weak transcription	HSMMtube	muscle
46	chr10:97919600-97923000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:97919600-97926800	Weak transcription	Fetal Thymus	thymus
48	chr10:97919600-97927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:97919800-97925000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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