Variant report

Variant	rs17111316
Chromosome Location	chr10:97851748-97851749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
2	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
3	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
4	chr10:97848458..97851464-chr10:97851557..97854751,6	MCF-7	breast:
5	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
6	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
7	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10159547	1.00[EUR][1000 genomes]
rs10509704	0.85[JPT][hapmap]
rs10509706	0.85[JPT][hapmap]
rs10748660	0.90[JPT][hapmap]
rs10882708	1.00[TSI][hapmap]
rs10882713	1.00[ASW][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882719	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10882722	1.00[YRI][hapmap]
rs10882724	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs10882730	0.86[YRI][hapmap]
rs10882731	0.88[JPT][hapmap]
rs10882732	0.85[JPT][hapmap]
rs10882742	0.85[JPT][hapmap]
rs11188564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188591	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188605	0.88[AFR][1000 genomes]
rs11188624	0.85[YRI][hapmap]
rs11188634	0.85[JPT][hapmap]
rs11188637	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs11188658	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap]
rs1172940	0.81[JPT][hapmap]
rs1172960	0.85[JPT][hapmap]
rs1172961	0.85[JPT][hapmap]
rs1177749	0.85[JPT][hapmap]
rs11812974	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11814171	0.84[AFR][1000 genomes]
rs11814327	0.93[YRI][hapmap]
rs11816772	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12264517	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12573650	0.86[YRI][hapmap]
rs12573660	0.86[YRI][hapmap]
rs17111273	1.00[ASW][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2242136	0.87[AMR][1000 genomes]
rs2484912	0.85[JPT][hapmap]
rs3300	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs34965352	0.83[AFR][1000 genomes]
rs3748225	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs3748226	0.85[JPT][hapmap]
rs3789925	0.93[YRI][hapmap]
rs3814228	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs57185821	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59237347	0.91[AFR][1000 genomes]
rs74151247	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs74151248	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74151249	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74151252	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9783259	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97850600-97852200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:97850600-97852600	Enhancers	HepG2	liver
3	chr10:97850800-97852200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links