Variant report

Variant	rs10882730
Chromosome Location	chr10:97912772-97912773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97912254..97914482-chr10:97916412..97918708,2	K562	blood:
2	chr10:97889731..97891560-chr10:97911556..97915285,3	K562	blood:
3	chr10:97802573..97805014-chr10:97910795..97914340,3	K562	blood:
4	chr10:97905728..97907615-chr10:97912207..97914595,2	K562	blood:
5	chr10:97906115..97908290-chr10:97911726..97914595,2	K562	blood:
6	chr10:97889876..97892137-chr10:97912175..97915299,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10786265	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882713	0.86[YRI][hapmap]
rs10882719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882720	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882725	0.89[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11188564	0.93[YRI][hapmap]
rs11188574	0.93[YRI][hapmap]
rs11188605	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188624	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs11813897	0.80[CHB][hapmap]
rs11814171	0.80[AFR][1000 genomes]
rs11814327	0.93[YRI][hapmap]
rs12573650	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12573660	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17111273	0.93[YRI][hapmap]
rs17111316	0.86[YRI][hapmap]
rs2305844	0.93[YRI][hapmap]
rs3088372	0.98[ASN][1000 genomes]
rs3300	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs34965352	1.00[ASN][1000 genomes]
rs3748225	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3789925	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3814228	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3827856	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55675520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57381231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59237347	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60394088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74151271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74151274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9783259	0.86[YRI][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
2	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
4	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
6	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:97891400-97918200	Weak transcription	NHLF	lung
10	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
11	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
12	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:97895200-97917600	Weak transcription	NH-A	brain
15	chr10:97897800-97916600	Weak transcription	HMEC	breast
16	chr10:97900400-97916400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:97902600-97912800	Weak transcription	Osteobl	bone
18	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:97903600-97920200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:97903800-97916200	Weak transcription	HUVEC	blood vessel
21	chr10:97904000-97918800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:97906000-97914400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:97908600-97913400	Weak transcription	Hela-S3	cervix
24	chr10:97909000-97918800	Strong transcription	HepG2	liver
25	chr10:97909400-97914800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:97910000-97917800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:97910600-97914200	Strong transcription	Fetal Intestine Small	intestine
28	chr10:97910600-97917000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:97910600-97918200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr10:97910600-97918400	Strong transcription	Liver	Liver
31	chr10:97910600-97918600	Strong transcription	Primary B cells from peripheral blood	blood
32	chr10:97910600-97918600	Strong transcription	Left Ventricle	heart
33	chr10:97910600-97919200	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:97910600-97919800	Strong transcription	Dnd41	blood
35	chr10:97910800-97914800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:97910800-97915000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:97910800-97917200	Strong transcription	Primary T cells from cord blood	blood
38	chr10:97910800-97918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:97910800-97918800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:97910800-97918800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:97910800-97919200	Strong transcription	Fetal Intestine Large	intestine
42	chr10:97910800-97920200	Strong transcription	Fetal Muscle Leg	muscle
43	chr10:97910800-97922200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:97911000-97913000	Strong transcription	A549	lung
45	chr10:97911000-97913200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:97911000-97913800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:97911000-97913800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:97911000-97914000	Strong transcription	Rectal Smooth Muscle	rectum
49	chr10:97911000-97914200	Strong transcription	Aorta	Aorta
50	chr10:97911000-97914400	Strong transcription	GM12878-XiMat	blood

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