Variant report

Variant	rs9783259
Chromosome Location	chr10:97833007-97833008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97829922..97834594-chr10:97848296..97851749,4	K562	blood:
2	chr10:97824314..97827004-chr10:97832805..97834413,3	K562	blood:
3	chr10:97802201..97804094-chr10:97831164..97833365,2	K562	blood:
4	chr10:97831238..97834189-chr10:97888869..97893291,4	K562	blood:
5	chr10:97803319..97804941-chr10:97831470..97833697,2	MCF-7	breast:
6	chr10:97829963..97833632-chr10:97888619..97891681,4	K562	blood:
7	chr10:97830030..97833459-chr10:97848165..97850862,3	MCF-7	breast:
8	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
9	chr10:97831034..97837353-chr10:97838908..97844842,8	K562	blood:
10	chr10:97831211..97833750-chr10:97833757..97836431,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10159547	1.00[EUR][1000 genomes]
rs10509704	0.81[JPT][hapmap]
rs10509706	0.81[JPT][hapmap]
rs10748660	0.85[JPT][hapmap]
rs10882713	0.81[CHB][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882719	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10882720	0.82[AFR][1000 genomes]
rs10882722	1.00[YRI][hapmap]
rs10882724	0.86[YRI][hapmap]
rs10882730	0.86[YRI][hapmap]
rs10882731	0.83[JPT][hapmap]
rs10882732	0.81[JPT][hapmap]
rs10882742	0.80[JPT][hapmap]
rs11188564	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188574	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188605	0.91[AFR][1000 genomes]
rs11188624	0.85[YRI][hapmap]
rs11188634	0.80[JPT][hapmap]
rs11188637	0.86[YRI][hapmap]
rs11188658	0.93[YRI][hapmap]
rs1172960	0.81[JPT][hapmap]
rs1172961	0.81[JPT][hapmap]
rs1177749	0.80[JPT][hapmap]
rs11812974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11814171	0.87[AFR][1000 genomes]
rs11814327	0.93[YRI][hapmap]
rs11816772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12264517	1.00[EUR][1000 genomes]
rs12573650	0.86[YRI][hapmap]
rs12573660	0.86[YRI][hapmap]
rs17111273	0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17111316	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2484912	0.81[JPT][hapmap]
rs3300	0.86[YRI][hapmap]
rs34965352	0.85[AFR][1000 genomes]
rs3748225	0.86[YRI][hapmap]
rs3748226	0.81[JPT][hapmap]
rs3789925	0.93[YRI][hapmap]
rs3814228	0.86[YRI][hapmap]
rs57185821	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59237347	0.93[AFR][1000 genomes]
rs74151247	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74151248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74151249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74151252	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
3	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
4	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
5	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
6	chr10:97818200-97833200	Weak transcription	NHEK	skin
7	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
9	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
11	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:97819400-97833400	Weak transcription	NHLF	lung
13	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:97819600-97848000	Weak transcription	HepG2	liver
16	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:97819600-97849400	Weak transcription	Ovary	ovary
20	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
21	chr10:97819800-97841400	Weak transcription	Liver	Liver
22	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:97820200-97833400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
28	chr10:97821000-97833200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:97822400-97834600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:97822600-97833400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:97822600-97833400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:97822600-97833400	Weak transcription	Fetal Thymus	thymus
39	chr10:97822600-97841800	Weak transcription	Adipose Nuclei	Adipose
40	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
42	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:97822800-97833800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
46	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr10:97823200-97833800	Weak transcription	Dnd41	blood
48	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain

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