Variant report

Variant	rs74151248
Chromosome Location	chr10:97804959-97804960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr10:97804515-97804976	K562	blood:	n/a	chr10:97804711-97804722
2	GATA3	chr10:97804885-97805277	SH-SY5Y	brain:	n/a	chr10:97805118-97805125
3	REST	chr10:97804166-97805045	HL-60	blood:	n/a	n/a
4	RCOR1	chr10:97804457-97805042	K562	blood:	n/a	n/a
5	MAZ	chr10:97802941-97804972	IMR90	lung:	n/a	chr10:97803523-97803532
6	TBL1XR1	chr10:97804346-97804993	K562	blood:	n/a	n/a
7	POLR2A	chr10:97802737-97804977	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr10:97802924-97804980	K562	blood:	n/a	chr10:97804737-97804747 chr10:97803523-97803532
9	CHD1	chr10:97804575-97805012	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr10:97802804-97805021	HL-60	blood:	n/a	n/a
11	MYC	chr10:97804396-97805170	MCF10A-Er-Src	breast:	n/a	chr10:97804737-97804747
12	POLR2A	chr10:97802667-97805275	MCF10A-Er-Src	breast:	n/a	n/a
13	EP300	chr10:97804706-97804972	K562	blood:	n/a	n/a
14	POLR2A	chr10:97802654-97804999	PBDE	blood:	n/a	n/a
15	TAL1	chr10:97804360-97804961	K562	blood:	n/a	n/a
16	EP300	chr10:97804632-97804986	GM12878	blood:	n/a	n/a
17	IRF1	chr10:97804207-97804982	K562	blood:	n/a	n/a
18	POLR2A	chr10:97802783-97805008	HUVEC	blood vessel:	n/a	n/a
19	MAX	chr10:97802769-97805152	NB4	blood:	n/a	chr10:97804737-97804747 chr10:97803523-97803532
20	MYC	chr10:97804468-97804987	K562	blood:	n/a	chr10:97804737-97804747
21	MYC	chr10:97804125-97805091	MCF10A-Er-Src	breast:	n/a	chr10:97804737-97804747
22	GATA1	chr10:97804123-97805181	PBDE	blood:	n/a	chr10:97804788-97804798 chr10:97805118-97805125 chr10:97804782-97804803 chr10:97804785-97804801 chr10:97804785-97804801 chr10:97804852-97804862
23	IRF1	chr10:97804557-97805165	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97803734..97806722-chr10:97959272..97960926,2	K562	blood:
3	chr10:97803146..97804768-chr10:97804855..97808048,3	K562	blood:
4	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:
5	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
6	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
7	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
8	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
9	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
10	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
11	chr10:97803632..97805225-chr10:97927626..97930343,2	K562	blood:
12	chr10:97803583..97805560-chr10:98074679..98076235,2	MCF-7	breast:

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000173088	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10159547	1.00[EUR][1000 genomes]
rs10882713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882719	0.84[AFR][1000 genomes]
rs10882720	0.82[AFR][1000 genomes]
rs11188564	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188605	0.91[AFR][1000 genomes]
rs11812974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814171	0.87[AFR][1000 genomes]
rs11816772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264517	1.00[EUR][1000 genomes]
rs17111273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17111316	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34965352	0.85[AFR][1000 genomes]
rs57185821	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59237347	0.93[AFR][1000 genomes]
rs74151247	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74151249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151252	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9783259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97802600-97805000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr10:97802600-97805000	Active TSS	Right Atrium	heart
3	chr10:97802600-97805200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr10:97802600-97805200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:97802600-97805200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:97802600-97805800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:97802800-97805000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:97802800-97805000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:97802800-97805000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:97802800-97805000	Active TSS	Fetal Muscle Trunk	muscle
11	chr10:97802800-97805000	Active TSS	Hela-S3	cervix
12	chr10:97802800-97805200	Active TSS	H9 Cell Line	embryonic stem cell
13	chr10:97802800-97805200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:97802800-97805200	Active TSS	NHLF	lung
15	chr10:97803000-97805000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr10:97803000-97805000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:97803000-97805000	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr10:97803000-97805000	Active TSS	Fetal Intestine Large	intestine
19	chr10:97803000-97805000	Active TSS	Fetal Stomach	stomach
20	chr10:97803000-97805000	Active TSS	HSMM	muscle
21	chr10:97803000-97805200	Active TSS	HSMMtube	muscle
22	chr10:97803000-97805400	Active TSS	H1 Cell Line	embryonic stem cell
23	chr10:97803000-97805400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:97803000-97805400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:97803000-97805600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:97803000-97805600	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr10:97803200-97805000	Active TSS	HUVEC	blood vessel
28	chr10:97803200-97805200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:97803400-97805200	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr10:97803600-97805000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:97803600-97805400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:97803800-97805000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:97803800-97805000	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr10:97804000-97805000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr10:97804000-97805000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr10:97804000-97805000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:97804000-97805000	Flanking Active TSS	Fetal Thymus	thymus
38	chr10:97804200-97805000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr10:97804200-97805000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:97804200-97805000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr10:97804200-97805000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr10:97804200-97805000	Flanking Active TSS	Thymus	Thymus
43	chr10:97804200-97805400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr10:97804200-97805600	Active TSS	Brain Germinal Matrix	brain
45	chr10:97804200-97805800	Flanking Active TSS	Dnd41	blood
46	chr10:97804400-97805000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr10:97804400-97805000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr10:97804400-97805000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:97804400-97805000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
50	chr10:97804400-97805000	Flanking Active TSS	Duodenum Mucosa	Duodenum

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