Variant report

Variant	rs34965352
Chromosome Location	chr10:97854163-97854164
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:97853835-97854219	HepG2	liver:	n/a	n/a
2	FOXA1	chr10:97853525-97854242	HepG2	liver:	n/a	n/a
3	FOXA1	chr10:97853575-97854178	HepG2	liver:	n/a	n/a
4	FOXA2	chr10:97852763-97854545	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
2	chr10:97848458..97851464-chr10:97851557..97854751,6	MCF-7	breast:
3	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
4	chr10:97848249..97852807-chr10:97853294..97857054,6	MCF-7	breast:
5	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

No data

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10509698	0.94[EUR][1000 genomes]
rs10509702	0.94[EUR][1000 genomes]
rs10509705	0.94[EUR][1000 genomes]
rs10786265	1.00[ASN][1000 genomes]
rs10882713	0.85[AFR][1000 genomes]
rs10882719	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882720	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882722	1.00[ASN][1000 genomes]
rs10882724	1.00[ASN][1000 genomes]
rs10882725	0.84[ASN][1000 genomes]
rs10882730	1.00[ASN][1000 genomes]
rs11188564	0.83[AFR][1000 genomes]
rs11188574	0.85[AFR][1000 genomes]
rs11188591	0.87[AFR][1000 genomes]
rs11188605	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188624	1.00[ASN][1000 genomes]
rs11188637	1.00[ASN][1000 genomes]
rs11812974	0.85[AFR][1000 genomes]
rs11814171	0.85[AFR][1000 genomes]
rs11816772	0.85[AFR][1000 genomes]
rs12573650	1.00[ASN][1000 genomes]
rs12573660	1.00[ASN][1000 genomes]
rs1414916	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1556745	0.96[EUR][1000 genomes]
rs17111273	0.85[AFR][1000 genomes]
rs17111316	0.83[AFR][1000 genomes]
rs17383897	0.83[EUR][1000 genomes]
rs17385450	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17468599	0.83[EUR][1000 genomes]
rs17476608	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476713	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2861240	0.96[EUR][1000 genomes]
rs3088372	0.98[ASN][1000 genomes]
rs3300	0.98[ASN][1000 genomes]
rs3748225	1.00[ASN][1000 genomes]
rs3789925	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814228	1.00[ASN][1000 genomes]
rs3827856	1.00[ASN][1000 genomes]
rs41291594	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41291606	0.85[EUR][1000 genomes]
rs4917721	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4918987	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55675520	1.00[ASN][1000 genomes]
rs57381231	0.96[ASN][1000 genomes]
rs59237347	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60394088	1.00[ASN][1000 genomes]
rs61729856	0.94[EUR][1000 genomes]
rs61731060	0.96[EUR][1000 genomes]
rs61858614	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858615	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858616	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858617	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858618	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858619	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858638	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858640	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858641	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858642	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858643	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858644	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858646	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858649	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858650	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858652	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858654	0.96[EUR][1000 genomes]
rs61858657	0.96[EUR][1000 genomes]
rs61858658	0.96[EUR][1000 genomes]
rs61859661	0.94[EUR][1000 genomes]
rs61859662	0.92[EUR][1000 genomes]
rs61869171	0.83[EUR][1000 genomes]
rs61869176	0.83[EUR][1000 genomes]
rs61869177	0.81[EUR][1000 genomes]
rs61869179	0.83[EUR][1000 genomes]
rs61869180	0.83[EUR][1000 genomes]
rs61869181	0.96[EUR][1000 genomes]
rs61869182	0.96[EUR][1000 genomes]
rs74151248	0.85[AFR][1000 genomes]
rs74151249	0.85[AFR][1000 genomes]
rs74151252	0.83[AFR][1000 genomes]
rs74151271	1.00[ASN][1000 genomes]
rs74151274	1.00[ASN][1000 genomes]
rs9783259	0.85[AFR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97852800-97854600	Enhancers	K562	blood
2	chr10:97854000-97854800	Enhancers	HepG2	liver

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