Variant report

Variant	rs61859661
Chromosome Location	chr10:97926507-97926508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97910420..97912683-chr10:97924000..97927291,3	K562	blood:
2	chr10:97920196..97922493-chr10:97925714..97928075,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509698	0.89[EUR][1000 genomes]
rs10509702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10509705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1414916	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1556745	0.90[EUR][1000 genomes]
rs17385450	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17476608	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17476713	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2861240	0.90[EUR][1000 genomes]
rs34965352	0.94[EUR][1000 genomes]
rs3789925	0.94[EUR][1000 genomes]
rs41291594	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41291606	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4917721	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4918987	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858614	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858615	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61858616	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858617	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858618	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858619	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858638	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858643	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61869181	0.90[EUR][1000 genomes]
rs61869182	0.90[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
3	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
5	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97918800-97926600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:97918800-97928000	Weak transcription	A549	lung
8	chr10:97918800-97929400	Weak transcription	HepG2	liver
9	chr10:97919400-97927400	Weak transcription	HSMMtube	muscle
10	chr10:97919600-97926800	Weak transcription	Fetal Thymus	thymus
11	chr10:97919600-97927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:97919800-97927200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:97920200-97926600	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:97920400-97926600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:97921200-97926600	Weak transcription	Primary B cells from cord blood	blood
18	chr10:97921800-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97921800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:97922000-97927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:97922200-97927600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:97923000-97927000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:97923200-97927400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:97924200-97927800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:97925400-97926800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:97925600-97926800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:97926400-97926800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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