Variant report

Variant	rs61731060
Chromosome Location	chr10:97917843-97917844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97912254..97914482-chr10:97916412..97918708,2	K562	blood:
2	chr10:97889802..97891398-chr10:97917264..97919016,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-1	chr10:97917647-97920099	ENSG00000177853
2	lnc-CCNJ-1	chr10:97915954-97920099	ENSG00000177853

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509698	0.90[EUR][1000 genomes]
rs10509702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10509705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1414916	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1556745	0.92[EUR][1000 genomes]
rs17385450	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17476608	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17476713	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2861240	0.92[EUR][1000 genomes]
rs34965352	0.96[EUR][1000 genomes]
rs3789925	0.96[EUR][1000 genomes]
rs41291594	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41291606	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4917721	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4918987	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858614	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858615	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858616	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858617	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858618	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858619	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858638	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858643	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61869181	0.92[EUR][1000 genomes]
rs61869182	0.92[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:97891400-97918200	Weak transcription	NHLF	lung
4	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
5	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:97903600-97920200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:97904000-97918800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:97909000-97918800	Strong transcription	HepG2	liver
11	chr10:97910600-97918200	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr10:97910600-97918400	Strong transcription	Liver	Liver
13	chr10:97910600-97918600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:97910600-97918600	Strong transcription	Left Ventricle	heart
15	chr10:97910600-97919200	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:97910600-97919800	Strong transcription	Dnd41	blood
17	chr10:97910800-97918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:97910800-97918800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:97910800-97918800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:97910800-97919200	Strong transcription	Fetal Intestine Large	intestine
21	chr10:97910800-97920200	Strong transcription	Fetal Muscle Leg	muscle
22	chr10:97910800-97922200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:97911000-97918000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:97911000-97918400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:97911000-97918800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:97911000-97919200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:97911000-97919400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:97911000-97919400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:97911000-97919400	Strong transcription	Adipose Nuclei	Adipose
30	chr10:97911000-97919600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr10:97911000-97919600	Strong transcription	Fetal Thymus	thymus
32	chr10:97911000-97919800	Strong transcription	Fetal Lung	lung
33	chr10:97911000-97919800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr10:97911000-97920000	Strong transcription	Placenta	Placenta
35	chr10:97911000-97920400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:97911000-97921000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr10:97911000-97921200	Strong transcription	Primary B cells from cord blood	blood
38	chr10:97911000-97921800	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:97911000-97921800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:97911000-97921800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr10:97911000-97922000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:97911000-97923000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:97911200-97918000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr10:97911200-97918200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr10:97911200-97918200	Strong transcription	Stomach Smooth Muscle	stomach
46	chr10:97911200-97918600	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:97911200-97919400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr10:97911200-97919600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:97911200-97919800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:97911400-97918800	Strong transcription	Fetal Kidney	kidney

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