Variant report

Variant	rs61859662
Chromosome Location	chr10:97930010-97930011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97928329..97930267-chr10:97931986..97933555,2	K562	blood:
2	chr10:97803632..97805225-chr10:97927626..97930343,2	K562	blood:
3	chr10:97888766..97890396-chr10:97927526..97930432,2	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509698	0.87[EUR][1000 genomes]
rs10509702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10509705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1414916	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1556745	0.88[EUR][1000 genomes]
rs17385450	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17476608	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17476713	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2861240	0.88[EUR][1000 genomes]
rs34965352	0.92[EUR][1000 genomes]
rs3789925	0.92[EUR][1000 genomes]
rs41291594	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41291606	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4917721	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4918987	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858614	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61858615	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61858616	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61858617	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61858618	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61858619	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61858638	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858643	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61869181	0.88[EUR][1000 genomes]
rs61869182	0.88[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:97930000-97930200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:97930000-97930200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:97930000-97930200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links