Variant report

Variant	rs10509705
Chromosome Location	chr10:97924794-97924795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97889748..97891438-chr10:97923791..97925678,2	MCF-7	breast:
2	chr10:97910420..97912683-chr10:97924000..97927291,3	K562	blood:
3	chr10:97922944..97925099-chr10:97927755..97929719,2	K562	blood:
4	chr10:97882072..97884554-chr10:97924471..97926244,2	MCF-7	breast:
5	chr10:97924295..97926346-chr10:97927012..97928959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10509698	0.87[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs10509702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1414916	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1556745	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17111260	1.00[GIH][hapmap]
rs17383897	0.87[CEU][hapmap]
rs17385450	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17468599	0.87[CEU][hapmap];1.00[TSI][hapmap]
rs17476608	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17476713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2861240	0.90[EUR][1000 genomes]
rs3088372	1.00[CEU][hapmap]
rs34965352	0.94[EUR][1000 genomes]
rs3789925	0.94[EUR][1000 genomes]
rs41291594	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41291606	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4917721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4918987	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858614	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858615	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61858616	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858617	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858618	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858619	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858638	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858643	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61869181	0.90[EUR][1000 genomes]
rs61869182	0.90[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
4	chr10:97913000-97925400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:97914200-97924800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:97914200-97925600	Weak transcription	Fetal Stomach	stomach
7	chr10:97914200-97925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:97914200-97926200	Weak transcription	Pancreas	Pancrea
9	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:97917600-97924800	Weak transcription	Small Intestine	intestine
11	chr10:97917600-97925200	Weak transcription	Fetal Brain Female	brain
12	chr10:97917600-97925800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:97918000-97925400	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:97918200-97925400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:97918200-97925800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:97918200-97925800	Weak transcription	Osteobl	bone
17	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
18	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:97918600-97925400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:97918600-97925600	Weak transcription	NHEK	skin
21	chr10:97918600-97925800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:97918600-97926200	Weak transcription	Left Ventricle	heart
23	chr10:97918600-97926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:97918800-97925800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:97918800-97926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:97918800-97926600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:97918800-97928000	Weak transcription	A549	lung
28	chr10:97918800-97929400	Weak transcription	HepG2	liver
29	chr10:97919000-97925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:97919200-97925800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:97919400-97925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:97919400-97925000	Weak transcription	K562	blood
33	chr10:97919400-97925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:97919400-97927400	Weak transcription	HSMMtube	muscle
35	chr10:97919600-97926800	Weak transcription	Fetal Thymus	thymus
36	chr10:97919600-97927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:97919800-97925000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:97919800-97925400	Weak transcription	Dnd41	blood
40	chr10:97919800-97927200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:97920000-97925400	Weak transcription	Primary T cells from cord blood	blood
42	chr10:97920200-97926600	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:97920400-97926600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:97921200-97925200	Weak transcription	Fetal Lung	lung
46	chr10:97921200-97926600	Weak transcription	Primary B cells from cord blood	blood
47	chr10:97921400-97925800	Weak transcription	Placenta	Placenta
48	chr10:97921600-97925400	Weak transcription	Adipose Nuclei	Adipose
49	chr10:97921800-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr10:97921800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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