Variant report

Variant	rs2861240
Chromosome Location	chr10:97795998-97795999
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97793353..97796377-chr10:97800032..97805188,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509698	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10509702	0.90[EUR][1000 genomes]
rs10509705	0.90[EUR][1000 genomes]
rs1414916	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1556745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17383897	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385450	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17468599	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17476608	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17476713	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34965352	0.96[EUR][1000 genomes]
rs3789925	0.96[EUR][1000 genomes]
rs41291594	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291606	0.81[EUR][1000 genomes]
rs4917721	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4918987	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61729856	0.90[EUR][1000 genomes]
rs61731060	0.92[EUR][1000 genomes]
rs61858614	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858615	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858616	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858617	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858618	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858619	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858638	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858640	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858641	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858642	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858643	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858644	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858646	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858649	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858650	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858652	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858654	0.92[EUR][1000 genomes]
rs61858657	0.92[EUR][1000 genomes]
rs61858658	0.92[EUR][1000 genomes]
rs61859661	0.90[EUR][1000 genomes]
rs61859662	0.88[EUR][1000 genomes]
rs61869171	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61869174	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61869176	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869177	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61869178	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61869179	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869180	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61869182	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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