Variant report

Variant	rs61869180
Chromosome Location	chr10:97782136-97782137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97777689..97783074-chr10:97800891..97805801,6	MCF-7	breast:
2	chr10:97774224..97779073-chr10:97779933..97783728,4	K562	blood:
3	chr10:97776162..97777909-chr10:97781246..97782872,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10509698	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1556745	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17383897	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17385450	0.83[EUR][1000 genomes]
rs17468599	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476608	0.83[EUR][1000 genomes]
rs17476713	0.83[EUR][1000 genomes]
rs2861240	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34965352	0.83[EUR][1000 genomes]
rs3789925	0.83[EUR][1000 genomes]
rs41291594	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4917721	0.83[EUR][1000 genomes]
rs4918987	0.83[EUR][1000 genomes]
rs61729856	0.81[EUR][1000 genomes]
rs61858614	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61858615	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61858616	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61858617	0.86[EUR][1000 genomes]
rs61858618	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61858619	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61858638	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61858640	0.81[EUR][1000 genomes]
rs61858641	0.83[EUR][1000 genomes]
rs61858642	0.83[EUR][1000 genomes]
rs61858643	0.83[EUR][1000 genomes]
rs61858644	0.83[EUR][1000 genomes]
rs61858649	0.83[EUR][1000 genomes]
rs61858650	0.83[EUR][1000 genomes]
rs61869171	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61869174	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61869176	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61869177	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61869178	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61869179	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61869181	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869182	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
2	chr10:97774600-97782200	Weak transcription	K562	blood
3	chr10:97777400-97782200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97777400-97782400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:97777400-97787000	Weak transcription	Left Ventricle	heart

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