Variant report

Variant	rs61858649
Chromosome Location	chr10:97878469-97878470
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97848457..97851252-chr10:97877480..97882183,4	MCF-7	breast:
2	chr10:97871710..97874019-chr10:97877046..97879264,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000200728	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10509698	0.94[EUR][1000 genomes]
rs10509702	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10509705	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1414916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1556745	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17383897	0.83[EUR][1000 genomes]
rs17385450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17468599	0.83[EUR][1000 genomes]
rs17476608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2861240	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34965352	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3789925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41291606	0.85[EUR][1000 genomes]
rs4917721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4918987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858614	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858615	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858617	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858618	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858619	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858638	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61869171	0.83[EUR][1000 genomes]
rs61869176	0.83[EUR][1000 genomes]
rs61869177	0.81[EUR][1000 genomes]
rs61869179	0.83[EUR][1000 genomes]
rs61869180	0.83[EUR][1000 genomes]
rs61869181	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61869182	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97878200-97879200	Enhancers	HepG2	liver
2	chr10:97878400-97879000	Active TSS	Colonic Mucosa	Colon
3	chr10:97878400-97879200	Active TSS	Placenta	Placenta
4	chr10:97878400-97879400	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr10:97878400-97879400	Active TSS	A549	lung

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