Variant report

Variant	rs17385450
Chromosome Location	chr10:97890600-97890601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:71929764..71930514-chr10:97889826..97890652,2	NB4	blood:
2	chr10:97849360..97850496-chr10:97889363..97891052,12	MCF-7	breast:
3	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
4	chr10:97849924..97850474-chr10:97889791..97890684,2	MCF-7	breast:
5	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
6	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
7	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
8	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
9	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:
10	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
11	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
12	chr10:97890578..97892383-chr10:98073643..98076276,2	MCF-7	breast:
13	chr10:97890117..97890643-chr9:127624245..127624860,2	Hela-S3	cervix:
14	chr10:97821145..97824482-chr10:97888850..97891356,3	MCF-7	breast:
15	chr10:97889763..97892237-chr10:97913785..97916695,2	K562	blood:
16	chr10:97889876..97892137-chr10:97912175..97915299,3	MCF-7	breast:
17	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
18	chr10:97889731..97891560-chr10:97911556..97915285,3	K562	blood:
19	chr10:97849709..97850473-chr10:97889478..97890662,4	HCT-116	colon:
20	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136950	Chromatin interaction
ENSG00000079332	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000136942	Chromatin interaction
ENSG00000266407	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509698	0.87[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10509702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10509705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1414916	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1556745	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17111260	1.00[GIH][hapmap]
rs17383897	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs17468599	0.87[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17476608	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2861240	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3088372	1.00[CEU][hapmap]
rs34965352	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3789925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41291606	0.85[EUR][1000 genomes]
rs4917721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4918987	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858614	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858615	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858617	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858618	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858619	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858638	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61869171	0.83[EUR][1000 genomes]
rs61869176	0.83[EUR][1000 genomes]
rs61869177	0.81[EUR][1000 genomes]
rs61869179	0.83[EUR][1000 genomes]
rs61869180	0.83[EUR][1000 genomes]
rs61869181	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61869182	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:153 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97889000-97890600	Active TSS	Brain Anterior Caudate	brain
2	chr10:97889000-97890600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
3	chr10:97889000-97890600	Active TSS	Brain Substantia Nigra	brain
4	chr10:97889000-97890800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr10:97889000-97890800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:97889000-97890800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr10:97889000-97890800	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr10:97889000-97891000	Active TSS	Psoas Muscle	Psoas
9	chr10:97889000-97891000	Active TSS	Right Ventricle	heart
10	chr10:97889000-97891200	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:97889000-97891200	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr10:97889000-97891400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:97889000-97891600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:97889000-97892200	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:97889000-97892200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:97889200-97890600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr10:97889200-97890600	Active TSS	Fetal Kidney	kidney
18	chr10:97889200-97890600	Active TSS	Lung	lung
19	chr10:97889200-97890600	Active TSS	NH-A	brain
20	chr10:97889200-97890800	Active TSS	Muscle Satellite Cultured Cells	--
21	chr10:97889200-97890800	Active TSS	Brain Hippocampus Middle	brain
22	chr10:97889200-97890800	Active TSS	Fetal Lung	lung
23	chr10:97889200-97890800	Active TSS	Left Ventricle	heart
24	chr10:97889200-97890800	Active TSS	Ovary	ovary
25	chr10:97889200-97890800	Active TSS	Pancreas	Pancrea
26	chr10:97889200-97890800	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr10:97889200-97890800	Active TSS	Small Intestine	intestine
28	chr10:97889200-97891000	Active TSS	H9 Cell Line	embryonic stem cell
29	chr10:97889200-97891000	Active TSS	Aorta	Aorta
30	chr10:97889200-97891000	Active TSS	Colonic Mucosa	Colon
31	chr10:97889200-97891000	Active TSS	Fetal Brain Female	brain
32	chr10:97889200-97891200	Active TSS	HSMMtube	muscle
33	chr10:97889200-97891400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr10:97889200-97891400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:97889200-97891400	Active TSS	NHLF	lung
36	chr10:97889200-97891600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:97889200-97891600	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr10:97889200-97891600	Active TSS	Stomach Smooth Muscle	stomach
39	chr10:97889200-97891800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr10:97889200-97892000	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr10:97889400-97890600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:97889400-97890600	Active TSS	Gastric	stomach
43	chr10:97889400-97890600	Transcr. at gene 5' and 3'	Right Atrium	heart
44	chr10:97889400-97890600	Bivalent/Poised TSS	HepG2	liver
45	chr10:97889400-97890800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:97889400-97890800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:97889400-97890800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:97889400-97890800	Active TSS	Fetal Heart	heart
49	chr10:97889400-97891000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:97889400-97891000	Active TSS	Fetal Brain Male	brain

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