Variant report

Variant	rs4917721
Chromosome Location	chr10:97889423-97889424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:374)
CpG islands
(count:183)
Chromatin interactive
region (count:16)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:374 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97888981-97890942	K562	blood:	n/a	n/a
2	GTF2B	chr10:97889288-97890557	K562	blood:	n/a	n/a
3	REST	chr10:97889061-97890867	H1-neurons	neurons:	n/a	chr10:97890229-97890247
4	MAX	chr10:97889105-97890572	GM12878	blood:	n/a	n/a
5	POLR2A	chr10:97889127-97890643	GM19099	blood:	n/a	n/a
6	BCL3	chr10:97889125-97890719	A549	lung:	n/a	chr10:97889764-97889773 chr10:97890234-97890247
7	RUNX3	chr10:97889250-97890749	GM12878	blood:	n/a	chr10:97890359-97890374 chr10:97890324-97890341
8	TAF1	chr10:97889362-97890589	GM12891	blood:	n/a	n/a
9	TEAD4	chr10:97889230-97889917	K562	blood:	n/a	n/a
10	BCLAF1	chr10:97889309-97890659	GM12878	blood:	n/a	chr10:97889764-97889773 chr10:97890234-97890247
11	MXI1	chr10:97889353-97890625	HepG2	liver:	n/a	n/a
12	MAFK	chr10:97889344-97889865	K562	blood:	n/a	n/a
13	RAD21	chr10:97889396-97889922	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr10:97889108-97890896	PANC-1	pancreas:	n/a	n/a
15	MYC	chr10:97889185-97890620	K562	blood:	n/a	n/a
16	POLR2A	chr10:97889289-97891066	HUVEC	blood vessel:	n/a	n/a
17	CREB1	chr10:97889283-97890675	H1-hESC	embryonic stem cell:	n/a	n/a
18	BHLHE40	chr10:97889262-97890001	HepG2	liver:	n/a	n/a
19	POLR2A	chr10:97889041-97890725	GM12891	blood:	n/a	n/a
20	POLR2A	chr10:97889109-97890719	K562	blood:	n/a	n/a
21	MYC	chr10:97889385-97890644	K562	blood:	n/a	n/a
22	YY1	chr10:97889284-97890641	GM12892	blood:	n/a	n/a
23	MYC	chr10:97888951-97890857	A549	lung:	n/a	n/a
24	POLR2A	chr10:97889290-97890632	H1-neurons	neurons:	n/a	n/a
25	YY1	chr10:97889095-97890678	A549	lung:	n/a	n/a
26	TCF12	chr10:97889097-97890806	A549	lung:	n/a	n/a
27	GABPA	chr10:97889196-97890612	MCF-7	breast:	n/a	chr10:97890299-97890308 chr10:97890046-97890053
28	CREB1	chr10:97889259-97890591	A549	lung:	n/a	n/a
29	EP300	chr10:97889289-97890060	A549	lung:	n/a	n/a
30	YY1	chr10:97889414-97890664	SK-N-SH	brain:	n/a	n/a
31	REST	chr10:97889278-97889473	PANC-1	pancreas:	n/a	n/a
32	GATA3	chr10:97889418-97890090	MCF-7	breast:	n/a	n/a
33	TEAD4	chr10:97889202-97890376	HepG2	liver:	n/a	n/a
34	MYBL2	chr10:97888994-97890749	HepG2	liver:	n/a	n/a
35	MAX	chr10:97889286-97890691	MCF-7	breast:	n/a	n/a
36	YY1	chr10:97889067-97890636	H1-hESC	embryonic stem cell:	n/a	n/a
37	RCOR1	chr10:97889367-97890614	K562	blood:	n/a	n/a
38	ARID3A	chr10:97889229-97889914	K562	blood:	n/a	n/a
39	SMC3	chr10:97889392-97890300	HepG2	liver:	n/a	n/a
40	TAF1	chr10:97889181-97890621	K562	blood:	n/a	n/a
41	RCOR1	chr10:97889098-97890031	HepG2	liver:	n/a	n/a
42	ELF1	chr10:97889313-97890409	SK-N-SH	brain:	n/a	chr10:97890154-97890165 chr10:97890155-97890164 chr10:97890154-97890165
43	TAF7	chr10:97889345-97889756	K562	blood:	n/a	n/a
44	ATF3	chr10:97889416-97890308	A549	lung:	n/a	chr10:97890297-97890306
45	ATF2	chr10:97889042-97889915	H1-hESC	embryonic stem cell:	n/a	n/a
46	CREB1	chr10:97889187-97890675	HepG2	liver:	n/a	n/a
47	POLR2A	chr10:97889367-97890715	U87	brain:	n/a	n/a
48	POLR2A	chr10:97889308-97890685	Gliobla	brain:	n/a	n/a
49	TAF1	chr10:97889271-97890666	GM12878	blood:	n/a	n/a
50	KAP1	chr10:97889193-97890592	HEK293	kidney:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:97889407-97889457	NB4	blood:	n/a
2	chr10:97889373-97889423	AG04449	skin:	fetal
3	chr10:97889407-97889457	GM12891	blood:	n/a
4	chr10:97889373-97889423	A549	lung:	n/a
5	chr10:97889407-97889457	HRPEpiC	eye:	n/a
6	chr10:97889379-97889429	Jurkat	blood:	n/a
7	chr10:97889379-97889429	A549	lung:	n/a
8	chr10:97889407-97889457	AG10803	skin:	n/a
9	chr10:97889373-97889423	RPTEC	kidney:	n/a
10	chr10:97889373-97889423	NT2-D1	testis:	n/a
11	chr10:97889379-97889429	IMR90	lung:	fetal
12	chr10:97889407-97889457	K562	blood:	n/a
13	chr10:97889379-97889429	SAEC	small airway:	n/a
14	chr10:97889379-97889429	HUVEC	blood vessel:	n/a
15	chr10:97889407-97889457	PFSK-1	brain:	n/a
16	chr10:97889407-97889457	SK-N-SH	brain:	n/a
17	chr10:97889379-97889429	HCM	heart:	n/a
18	chr10:97889379-97889429	K562	blood:	n/a
19	chr10:97889373-97889423	HRCEpiC	kidney:	n/a
20	chr10:97889407-97889457	HEEpiC	esophagus:	n/a
21	chr10:97889379-97889429	MCF10A-Er-Src	breast:	n/a
22	chr10:97889407-97889457	AG09309	skin:	n/a
23	chr10:97889373-97889423	GM12892	blood:	n/a
24	chr10:97889407-97889457	HCM	heart:	n/a
25	chr10:97889373-97889423	HIPEpiC	eye:	n/a
26	chr10:97889373-97889423	GM06990	blood:	n/a
27	chr10:97889407-97889457	AoSMC	blood vessel:	n/a
28	chr10:97889407-97889457	ProgFib	skin:	n/a
29	chr10:97889373-97889423	HRE	kidney:	n/a
30	chr10:97889373-97889423	ProgFib	skin:	n/a
31	chr10:97889379-97889429	GM12891	blood:	n/a
32	chr10:97889373-97889423	HCT-116	colon:	n/a
33	chr10:97889373-97889423	HCM	heart:	n/a
34	chr10:97889379-97889429	PrEC	prostate:	n/a
35	chr10:97889373-97889423	PFSK-1	brain:	n/a
36	chr10:97889407-97889457	HNPCEpiC	eye:	n/a
37	chr10:97889379-97889429	HL-60	blood:	n/a
38	chr10:97889379-97889429	HRE	kidney:	n/a
39	chr10:97889379-97889429	HEEpiC	esophagus:	n/a
40	chr10:97889379-97889429	AG10803	skin:	n/a
41	chr10:97889379-97889429	Caco-2	colon:	n/a
42	chr10:97889379-97889429	AG04450	lung:	fetal
43	chr10:97889373-97889423	ovcar-3	ovarian:	n/a
44	chr10:97889379-97889429	AG09319	gingival:	n/a
45	chr10:97889373-97889423	HepG2	liver:	n/a
46	chr10:97889407-97889457	HepG2	liver:	n/a
47	chr10:97889373-97889423	Hela-S3	cervix:	n/a
48	chr10:97889373-97889423	HPAEpiC	pulmonary alveolar:	n/a
49	chr10:97889373-97889423	IMR90	lung:	fetal
50	chr10:97889379-97889429	HMEC	breast:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97888142..97890161-chr10:97948497..97950292,2	MCF-7	breast:
2	chr10:97849360..97850496-chr10:97889363..97891052,12	MCF-7	breast:
3	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
4	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
5	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
6	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
7	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
8	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:
9	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
10	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
11	chr10:97821145..97824482-chr10:97888850..97891356,3	MCF-7	breast:
12	chr10:97849403..97850506-chr10:97889252..97890588,8	NB4	blood:
13	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
14	chr10:97849316..97850266-chr10:97888828..97890559,6	MCF-7	breast:
15	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
16	chr10:97889331..97890326-chr13:103498147..103498725,2	NB4	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BLNK-4	chr10:97888812-97890249	NONHSAT015794

No data

Variant related genes	Relation type
ZNF518A	TF binding region
ZNF518A	CpG island
ENSG00000229417	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000134899	Chromatin interaction
ENSG00000266407	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509698	0.87[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10509702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10509705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1414916	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1556745	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17111260	1.00[GIH][hapmap]
rs17383897	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs17385450	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17468599	0.87[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17476608	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2861240	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3088372	1.00[CEU][hapmap]
rs34965352	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3789925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41291606	0.85[EUR][1000 genomes]
rs4918987	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858614	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858615	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858617	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858618	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858619	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858638	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61869171	0.83[EUR][1000 genomes]
rs61869176	0.83[EUR][1000 genomes]
rs61869177	0.81[EUR][1000 genomes]
rs61869179	0.83[EUR][1000 genomes]
rs61869180	0.83[EUR][1000 genomes]
rs61869181	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61869182	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97889000-97889600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97889000-97889600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:97889000-97889600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr10:97889000-97889600	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr10:97889000-97889600	Flanking Active TSS	Brain Angular Gyrus	brain
6	chr10:97889000-97889600	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr10:97889000-97889600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:97889000-97889600	Flanking Active TSS	NHEK	skin
9	chr10:97889000-97889800	Flanking Active TSS	Dnd41	blood
10	chr10:97889000-97890400	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr10:97889000-97890600	Active TSS	Brain Anterior Caudate	brain
12	chr10:97889000-97890600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
13	chr10:97889000-97890600	Active TSS	Brain Substantia Nigra	brain
14	chr10:97889000-97890800	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr10:97889000-97890800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97889000-97890800	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr10:97889000-97890800	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr10:97889000-97891000	Active TSS	Psoas Muscle	Psoas
19	chr10:97889000-97891000	Active TSS	Right Ventricle	heart
20	chr10:97889000-97891200	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr10:97889000-97891200	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr10:97889000-97891400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:97889000-97891600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:97889000-97892200	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr10:97889000-97892200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:97889200-97889600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
27	chr10:97889200-97889600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:97889200-97889600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr10:97889200-97889600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr10:97889200-97889600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr10:97889200-97889600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr10:97889200-97889600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:97889200-97889600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr10:97889200-97889600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr10:97889200-97889600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:97889200-97889600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr10:97889200-97889600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr10:97889200-97889600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr10:97889200-97889600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr10:97889200-97889600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:97889200-97889600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr10:97889200-97889600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:97889200-97889600	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr10:97889200-97889600	Flanking Active TSS	Liver	Liver
45	chr10:97889200-97889600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr10:97889200-97889600	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr10:97889200-97889600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr10:97889200-97889600	Flanking Active TSS	Fetal Intestine Large	intestine
49	chr10:97889200-97889600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
50	chr10:97889200-97889600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

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