Variant report

Variant	rs17476608
Chromosome Location	chr10:97890656-97890657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97849360..97850496-chr10:97889363..97891052,12	MCF-7	breast:
2	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
3	chr10:97849924..97850474-chr10:97889791..97890684,2	MCF-7	breast:
4	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
5	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
6	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
7	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
8	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:
9	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
10	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
11	chr10:97890578..97892383-chr10:98073643..98076276,2	MCF-7	breast:
12	chr10:97821145..97824482-chr10:97888850..97891356,3	MCF-7	breast:
13	chr10:97889763..97892237-chr10:97913785..97916695,2	K562	blood:
14	chr10:97889876..97892137-chr10:97912175..97915299,3	MCF-7	breast:
15	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
16	chr10:97889731..97891560-chr10:97911556..97915285,3	K562	blood:
17	chr10:97849709..97850473-chr10:97889478..97890662,4	HCT-116	colon:
18	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000266407	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10509698	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs10509702	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10509705	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1414916	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1556745	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17383897	0.83[EUR][1000 genomes]
rs17385450	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17468599	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs17476713	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2861240	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3088372	1.00[CEU][hapmap]
rs34965352	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3789925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41291606	0.85[EUR][1000 genomes]
rs4917721	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4918987	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61729856	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858614	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858615	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858617	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858618	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858619	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858638	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61869171	0.83[EUR][1000 genomes]
rs61869176	0.83[EUR][1000 genomes]
rs61869177	0.81[EUR][1000 genomes]
rs61869179	0.83[EUR][1000 genomes]
rs61869180	0.83[EUR][1000 genomes]
rs61869181	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61869182	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97889000-97890800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr10:97889000-97890800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:97889000-97890800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr10:97889000-97890800	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr10:97889000-97891000	Active TSS	Psoas Muscle	Psoas
6	chr10:97889000-97891000	Active TSS	Right Ventricle	heart
7	chr10:97889000-97891200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:97889000-97891200	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr10:97889000-97891400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:97889000-97891600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:97889000-97892200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:97889000-97892200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:97889200-97890800	Active TSS	Muscle Satellite Cultured Cells	--
14	chr10:97889200-97890800	Active TSS	Brain Hippocampus Middle	brain
15	chr10:97889200-97890800	Active TSS	Fetal Lung	lung
16	chr10:97889200-97890800	Active TSS	Left Ventricle	heart
17	chr10:97889200-97890800	Active TSS	Ovary	ovary
18	chr10:97889200-97890800	Active TSS	Pancreas	Pancrea
19	chr10:97889200-97890800	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr10:97889200-97890800	Active TSS	Small Intestine	intestine
21	chr10:97889200-97891000	Active TSS	H9 Cell Line	embryonic stem cell
22	chr10:97889200-97891000	Active TSS	Aorta	Aorta
23	chr10:97889200-97891000	Active TSS	Colonic Mucosa	Colon
24	chr10:97889200-97891000	Active TSS	Fetal Brain Female	brain
25	chr10:97889200-97891200	Active TSS	HSMMtube	muscle
26	chr10:97889200-97891400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr10:97889200-97891400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:97889200-97891400	Active TSS	NHLF	lung
29	chr10:97889200-97891600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:97889200-97891600	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr10:97889200-97891600	Active TSS	Stomach Smooth Muscle	stomach
32	chr10:97889200-97891800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:97889200-97892000	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr10:97889400-97890800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:97889400-97890800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:97889400-97890800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:97889400-97890800	Active TSS	Fetal Heart	heart
38	chr10:97889400-97891000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:97889400-97891000	Active TSS	Fetal Brain Male	brain
40	chr10:97889400-97891000	Active TSS	Placenta Amnion	Placenta Amnion
41	chr10:97889400-97891200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:97889400-97891200	Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr10:97889400-97891200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:97889400-97891200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:97889400-97891200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:97889400-97891200	Active TSS	Fetal Stomach	stomach
47	chr10:97889400-97891400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97889400-97891400	Active TSS	A549	lung
49	chr10:97889400-97891600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:97889400-97892200	Active TSS	K562	blood

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