Variant report

Variant	rs1556745
Chromosome Location	chr10:97799710-97799711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97798115..97801536-chr10:97801750..97804794,4	MCF-7	breast:
3	chr10:97793581..97795373-chr10:97798267..97800103,2	K562	blood:
4	chr10:97797859..97799974-chr10:97801220..97803760,3	K562	blood:
5	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509698	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10509702	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10509705	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs1414916	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17111260	1.00[GIH][hapmap]
rs17383897	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385450	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17468599	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17476608	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17476713	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2861240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3088372	1.00[CEU][hapmap]
rs34965352	0.96[EUR][1000 genomes]
rs3789925	0.96[EUR][1000 genomes]
rs41291594	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41291606	0.81[EUR][1000 genomes]
rs4917721	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4918987	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61729856	0.90[EUR][1000 genomes]
rs61731060	0.92[EUR][1000 genomes]
rs61858614	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858615	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858616	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858617	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858618	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858619	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858638	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61858640	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858641	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858642	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858643	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858644	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858646	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858649	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858650	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61858652	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858654	0.92[EUR][1000 genomes]
rs61858657	0.92[EUR][1000 genomes]
rs61858658	0.92[EUR][1000 genomes]
rs61859661	0.90[EUR][1000 genomes]
rs61859662	0.88[EUR][1000 genomes]
rs61869171	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61869174	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61869176	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869177	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61869178	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61869179	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869180	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61869182	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97797800-97802600	Weak transcription	Small Intestine	intestine
2	chr10:97798800-97802400	Weak transcription	GM12878-XiMat	blood
3	chr10:97799000-97802800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:97799200-97802000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:97799200-97802200	Weak transcription	K562	blood
6	chr10:97799400-97802400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97799400-97802400	Weak transcription	HUVEC	blood vessel
11	chr10:97799400-97802600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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