Variant report

Variant	rs61729856
Chromosome Location	chr10:97919550-97919551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97914380..97917567-chr10:97919091..97921187,3	K562	blood:
2	chr10:97848882..97852463-chr10:97918917..97921781,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-1	chr10:97917647-97920099	ENSG00000177853
2	lnc-CCNJ-1	chr10:97915954-97920099	ENSG00000177853

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509698	0.89[EUR][1000 genomes]
rs10509702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10509705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1414916	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1556745	0.90[EUR][1000 genomes]
rs17383897	0.81[EUR][1000 genomes]
rs17385450	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17468599	0.81[EUR][1000 genomes]
rs17476608	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17476713	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2861240	0.90[EUR][1000 genomes]
rs34965352	0.94[EUR][1000 genomes]
rs3789925	0.94[EUR][1000 genomes]
rs41291594	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41291606	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4917721	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4918987	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61731060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858614	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858615	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61858616	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858617	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858618	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858619	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858638	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61858640	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61858641	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858642	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858643	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858644	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858646	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61858649	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858650	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61858652	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61858654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61858658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61859661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61869171	0.81[EUR][1000 genomes]
rs61869176	0.81[EUR][1000 genomes]
rs61869179	0.81[EUR][1000 genomes]
rs61869180	0.81[EUR][1000 genomes]
rs61869181	0.90[EUR][1000 genomes]
rs61869182	0.90[EUR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
4	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:97903600-97920200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:97910600-97919800	Strong transcription	Dnd41	blood
9	chr10:97910800-97920200	Strong transcription	Fetal Muscle Leg	muscle
10	chr10:97910800-97922200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:97911000-97919600	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:97911000-97919600	Strong transcription	Fetal Thymus	thymus
13	chr10:97911000-97919800	Strong transcription	Fetal Lung	lung
14	chr10:97911000-97919800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr10:97911000-97920000	Strong transcription	Placenta	Placenta
16	chr10:97911000-97920400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:97911000-97921000	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr10:97911000-97921200	Strong transcription	Primary B cells from cord blood	blood
19	chr10:97911000-97921800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97911000-97921800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:97911000-97921800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97911000-97922000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:97911000-97923000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:97911200-97919600	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:97911200-97919800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:97912000-97919600	Weak transcription	Gastric	stomach
27	chr10:97912400-97920800	Weak transcription	Right Ventricle	heart
28	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
29	chr10:97913000-97919600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:97913000-97920200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:97913000-97925400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:97913200-97920600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:97914200-97924800	Weak transcription	Fetal Intestine Small	intestine
34	chr10:97914200-97925600	Weak transcription	Fetal Stomach	stomach
35	chr10:97914200-97925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:97914200-97926200	Weak transcription	Pancreas	Pancrea
37	chr10:97914600-97921800	Weak transcription	Brain Germinal Matrix	brain
38	chr10:97915000-97920400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:97915400-97923200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:97915400-97923400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:97916200-97921000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:97916400-97919600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:97916400-97920400	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:97917000-97920600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:97917200-97922200	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:97917400-97920600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr10:97917400-97921600	Weak transcription	Colonic Mucosa	Colon
48	chr10:97917400-97922800	Weak transcription	Fetal Heart	heart
49	chr10:97917400-97923000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion

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