Variant report

Variant	rs55675520
Chromosome Location	chr10:97879186-97879187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97848457..97851252-chr10:97877480..97882183,4	MCF-7	breast:
2	chr10:97871710..97874019-chr10:97877046..97879264,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000200728	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10786265	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882719	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882720	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882724	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882725	0.84[ASN][1000 genomes]
rs10882730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188637	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188658	0.84[AFR][1000 genomes]
rs12573650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12573660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3088372	0.98[ASN][1000 genomes]
rs3300	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs34965352	1.00[ASN][1000 genomes]
rs3748225	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3789925	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3814228	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3827856	1.00[ASN][1000 genomes]
rs57381231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59237347	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60394088	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74151271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74151274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97878200-97879200	Enhancers	HepG2	liver
2	chr10:97878400-97879200	Active TSS	Placenta	Placenta
3	chr10:97878400-97879400	Active TSS	Rectal Mucosa Donor 31	rectum
4	chr10:97878400-97879400	Active TSS	A549	lung
5	chr10:97878600-97879400	Active TSS	Duodenum Mucosa	Duodenum
6	chr10:97878600-97879400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr10:97879000-97883200	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links