Variant report

Variant	rs11188658
Chromosome Location	chr10:97952817-97952818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:97952764-97953006	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97801040..97803608-chr10:97952712..97954225,2	K562	blood:

Variant related genes	Relation type
NPM1P25	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10786265	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10882713	1.00[ASW][hapmap];0.91[MKK][hapmap]
rs10882719	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs10882720	0.84[AFR][1000 genomes]
rs10882722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs10882724	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs10882725	0.89[CHB][hapmap];0.80[CHD][hapmap];0.92[JPT][hapmap]
rs10882730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs11188560	0.84[CHB][hapmap]
rs11188564	0.86[YRI][hapmap]
rs11188574	0.86[YRI][hapmap]
rs11188624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs11188637	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs11813897	0.84[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap]
rs11814327	0.86[YRI][hapmap]
rs12573650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs12573660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs17111273	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs17111316	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap]
rs2305844	1.00[MEX][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs3300	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap]
rs3748225	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs3789925	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs3814228	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs3827856	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55675520	0.84[AFR][1000 genomes]
rs57381231	0.84[AFR][1000 genomes]
rs60394088	0.82[AFR][1000 genomes]
rs74151271	0.82[AFR][1000 genomes]
rs74151274	0.82[AFR][1000 genomes]
rs9783259	0.93[YRI][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
3	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
4	chr10:97948200-97963600	Weak transcription	Gastric	stomach
5	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97948400-97957000	Weak transcription	Fetal Intestine Small	intestine
7	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
10	chr10:97948800-97959200	Weak transcription	Spleen	Spleen
11	chr10:97949600-97956600	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97949600-97989200	Strong transcription	Liver	Liver
13	chr10:97949800-97953600	Strong transcription	Duodenum Mucosa	Duodenum
14	chr10:97949800-97953600	ZNF genes & repeats	GM12878-XiMat	blood
15	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus
16	chr10:97950600-97960600	Weak transcription	Small Intestine	intestine
17	chr10:97951800-97956000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:97952000-97953000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:97952000-97954600	Weak transcription	Fetal Intestine Large	intestine
20	chr10:97952000-97955000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
22	chr10:97952200-97971800	Strong transcription	Primary B cells from cord blood	blood

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