Variant report

Variant	rs11188564
Chromosome Location	chr10:97795321-97795322
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97793006..97795682-chr10:97800634..97803734,3	K562	blood:
2	chr10:97793928..97795682-chr10:97800634..97802290,2	K562	blood:
3	chr10:97792937..97795439-chr3:196864575..196866561,2	MCF-7	breast:
4	chr10:97793581..97795373-chr10:97798267..97800103,2	K562	blood:
5	chr10:97793326..97795586-chr10:97796507..97798094,3	K562	blood:
6	chr10:97793353..97796377-chr10:97800032..97805188,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10159547	1.00[EUR][1000 genomes]
rs10509704	0.85[JPT][hapmap]
rs10509706	0.85[JPT][hapmap]
rs10748660	0.90[JPT][hapmap]
rs10786265	0.80[YRI][hapmap]
rs10882713	0.81[CHB][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882719	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs10882722	0.93[YRI][hapmap]
rs10882724	0.93[YRI][hapmap]
rs10882730	0.93[YRI][hapmap]
rs10882731	0.88[JPT][hapmap]
rs10882732	0.85[JPT][hapmap]
rs10882742	0.85[JPT][hapmap]
rs11188574	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188591	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188605	0.89[AFR][1000 genomes]
rs11188624	0.93[YRI][hapmap]
rs11188634	0.85[JPT][hapmap]
rs11188637	0.93[YRI][hapmap]
rs11188658	0.86[YRI][hapmap]
rs1172940	0.82[JPT][hapmap]
rs1172960	0.85[JPT][hapmap]
rs1172961	0.85[JPT][hapmap]
rs1177749	0.85[JPT][hapmap]
rs11812974	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11814171	0.85[AFR][1000 genomes]
rs11814327	1.00[YRI][hapmap]
rs11816772	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12264517	1.00[EUR][1000 genomes]
rs12573650	0.93[YRI][hapmap]
rs12573660	0.93[YRI][hapmap]
rs17111273	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17111316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2305844	0.86[YRI][hapmap]
rs2484912	0.85[JPT][hapmap]
rs3300	0.93[YRI][hapmap]
rs34965352	0.83[AFR][1000 genomes]
rs3748225	0.93[YRI][hapmap]
rs3748226	0.85[JPT][hapmap]
rs3789925	0.87[YRI][hapmap]
rs3814228	0.93[YRI][hapmap]
rs57185821	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59237347	0.91[AFR][1000 genomes]
rs74151247	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74151248	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74151249	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74151252	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9783259	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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