Variant report

Variant	rs11188634
Chromosome Location	chr10:97915182-97915183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97915020-97915238	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97889763..97892237-chr10:97913785..97916695,2	K562	blood:
2	chr10:97889731..97891560-chr10:97911556..97915285,3	K562	blood:
3	chr10:97889876..97892137-chr10:97912175..97915299,3	MCF-7	breast:

Variant related genes	Relation type
ZNF518A	TF binding region
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10128368	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1023331	0.83[CEU][hapmap]
rs1029215	0.89[ASW][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10509704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732776	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10748659	0.80[CEU][hapmap]
rs10748660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882742	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188564	0.85[JPT][hapmap]
rs11188574	0.85[JPT][hapmap]
rs11188633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188642	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188643	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188655	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188660	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1172937	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1172940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172943	0.84[CEU][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes]
rs1172946	0.84[EUR][1000 genomes]
rs1172958	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1172960	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1172961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172963	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1177749	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12766762	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782206	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1414919	0.89[ASW][hapmap];0.84[CEU][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17111316	0.85[JPT][hapmap]
rs1764305	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446023	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs2484912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3748226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762090	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7084542	1.00[ASW][hapmap];0.88[CEU][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9783259	0.80[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11188634	CRTAC1	cis	parietal	SCAN
rs11188634	GPR120	cis	cerebellum	SCAN
rs11188634	MYOF	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
2	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:97891400-97918200	Weak transcription	NHLF	lung
6	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
7	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:97895200-97917600	Weak transcription	NH-A	brain
10	chr10:97897800-97916600	Weak transcription	HMEC	breast
11	chr10:97900400-97916400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:97903600-97920200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:97903800-97916200	Weak transcription	HUVEC	blood vessel
15	chr10:97904000-97918800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:97909000-97918800	Strong transcription	HepG2	liver
17	chr10:97910000-97917800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:97910600-97917000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:97910600-97918200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr10:97910600-97918400	Strong transcription	Liver	Liver
21	chr10:97910600-97918600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:97910600-97918600	Strong transcription	Left Ventricle	heart
23	chr10:97910600-97919200	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:97910600-97919800	Strong transcription	Dnd41	blood
25	chr10:97910800-97917200	Strong transcription	Primary T cells from cord blood	blood
26	chr10:97910800-97918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:97910800-97918800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:97910800-97918800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:97910800-97919200	Strong transcription	Fetal Intestine Large	intestine
30	chr10:97910800-97920200	Strong transcription	Fetal Muscle Leg	muscle
31	chr10:97910800-97922200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:97911000-97915200	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:97911000-97917000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:97911000-97917000	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr10:97911000-97917200	Strong transcription	Colon Smooth Muscle	Colon
36	chr10:97911000-97917400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:97911000-97917400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:97911000-97917600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:97911000-97917600	Strong transcription	Brain Anterior Caudate	brain
40	chr10:97911000-97917600	Strong transcription	Ovary	ovary
41	chr10:97911000-97917800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr10:97911000-97918000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:97911000-97918400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:97911000-97918800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:97911000-97919200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:97911000-97919400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:97911000-97919400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:97911000-97919400	Strong transcription	Adipose Nuclei	Adipose
49	chr10:97911000-97919600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:97911000-97919600	Strong transcription	Fetal Thymus	thymus

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