Variant report

Variant	rs11188642
Chromosome Location	chr10:97925438-97925439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97889748..97891438-chr10:97923791..97925678,2	MCF-7	breast:
2	chr10:97910420..97912683-chr10:97924000..97927291,3	K562	blood:
3	chr10:97882072..97884554-chr10:97924471..97926244,2	MCF-7	breast:
4	chr10:97924295..97926346-chr10:97927012..97928959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10128368	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1029215	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10509704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732776	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10748660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882731	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882732	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882742	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188633	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188634	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188643	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188655	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188660	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1172937	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1172940	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172943	0.84[EUR][1000 genomes]
rs1172946	0.84[EUR][1000 genomes]
rs1172958	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1172960	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1172961	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172963	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1177749	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12766762	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782206	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1414919	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1764305	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446023	0.87[EUR][1000 genomes]
rs3748226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762090	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7084542	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
3	chr10:97914200-97925600	Weak transcription	Fetal Stomach	stomach
4	chr10:97914200-97925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97914200-97926200	Weak transcription	Pancreas	Pancrea
6	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:97917600-97925800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:97918200-97925800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:97918200-97925800	Weak transcription	Osteobl	bone
10	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
11	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:97918600-97925600	Weak transcription	NHEK	skin
13	chr10:97918600-97925800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr10:97918600-97926200	Weak transcription	Left Ventricle	heart
15	chr10:97918600-97926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:97918800-97925800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:97918800-97926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:97918800-97926600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:97918800-97928000	Weak transcription	A549	lung
20	chr10:97918800-97929400	Weak transcription	HepG2	liver
21	chr10:97919200-97925800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:97919400-97927400	Weak transcription	HSMMtube	muscle
23	chr10:97919600-97926800	Weak transcription	Fetal Thymus	thymus
24	chr10:97919600-97927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:97919800-97927200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:97920200-97926600	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:97920400-97926600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:97921200-97926600	Weak transcription	Primary B cells from cord blood	blood
31	chr10:97921400-97925800	Weak transcription	Placenta	Placenta
32	chr10:97921800-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:97921800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:97922000-97927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:97922200-97927600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:97923000-97925800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr10:97923000-97927000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:97923200-97926400	Weak transcription	Liver	Liver
39	chr10:97923200-97927400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:97923400-97925600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:97924200-97927800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:97924600-97925800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr10:97925200-97925600	Weak transcription	Fetal Intestine Small	intestine
44	chr10:97925400-97925600	ZNF genes & repeats	Dnd41	blood
45	chr10:97925400-97926000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:97925400-97926000	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr10:97925400-97926000	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr10:97925400-97926000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
49	chr10:97925400-97926200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:97925400-97926400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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