Variant report

Variant	rs11188643
Chromosome Location	chr10:97926295-97926296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97910420..97912683-chr10:97924000..97927291,3	K562	blood:
2	chr10:97924295..97926346-chr10:97927012..97928959,2	MCF-7	breast:
3	chr10:97920196..97922493-chr10:97925714..97928075,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10128368	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1029215	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10509704	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509706	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732776	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10748660	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882742	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188633	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188634	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188642	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188655	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188660	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1172937	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1172940	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172943	0.83[EUR][1000 genomes]
rs1172946	0.83[EUR][1000 genomes]
rs1172958	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1172960	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1172961	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172963	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1177749	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12766762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782206	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1414919	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1764305	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446023	0.86[EUR][1000 genomes]
rs3748226	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762090	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7084542	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
3	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
5	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97918600-97926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:97918800-97926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:97918800-97926600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:97918800-97928000	Weak transcription	A549	lung
10	chr10:97918800-97929400	Weak transcription	HepG2	liver
11	chr10:97919400-97927400	Weak transcription	HSMMtube	muscle
12	chr10:97919600-97926800	Weak transcription	Fetal Thymus	thymus
13	chr10:97919600-97927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:97919800-97927200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:97920200-97926600	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:97920400-97926600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:97921200-97926600	Weak transcription	Primary B cells from cord blood	blood
20	chr10:97921800-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:97921800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:97922000-97927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:97922200-97927600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:97923000-97927000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:97923200-97926400	Weak transcription	Liver	Liver
26	chr10:97923200-97927400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:97924200-97927800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:97925400-97926400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr10:97925400-97926800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:97925600-97926800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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