Variant report

Variant	rs11188660
Chromosome Location	chr10:97957324-97957325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1029215	0.89[ASW][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.82[YRI][hapmap]
rs10509704	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10509706	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10748660	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882731	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882732	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882742	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188564	0.90[JPT][hapmap]
rs11188574	0.90[JPT][hapmap]
rs11188633	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188634	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188642	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188643	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188655	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188663	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1172937	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1172940	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1172943	0.85[MEX][hapmap]
rs1172958	0.90[YRI][hapmap]
rs1172960	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1172961	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1172963	0.80[AFR][1000 genomes]
rs1177749	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12766762	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12776881	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12782206	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414919	0.89[ASW][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.91[YRI][hapmap]
rs17111273	0.84[JPT][hapmap]
rs17111316	0.90[JPT][hapmap]
rs1764305	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2446023	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs2484912	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]
rs2861304	0.85[ASN][1000 genomes]
rs3748226	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3762090	1.00[ASW][hapmap];0.84[CEU][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs7084542	1.00[ASW][hapmap];0.81[CEU][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.91[YRI][hapmap]
rs747259	0.85[MEX][hapmap]
rs7475754	0.80[MEX][hapmap]
rs9783259	0.84[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11188660	GPR120	cis	cerebellum	SCAN
rs11188660	MYOF	cis	parietal	SCAN
rs11188660	CRTAC1	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
2	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
3	chr10:97948200-97963600	Weak transcription	Gastric	stomach
4	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
8	chr10:97948800-97959200	Weak transcription	Spleen	Spleen
9	chr10:97949600-97989200	Strong transcription	Liver	Liver
10	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus
11	chr10:97950600-97960600	Weak transcription	Small Intestine	intestine
12	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
13	chr10:97952200-97971800	Strong transcription	Primary B cells from cord blood	blood
14	chr10:97953600-97967000	Weak transcription	Colonic Mucosa	Colon
15	chr10:97953600-97967800	Strong transcription	GM12878-XiMat	blood
16	chr10:97954600-97964200	Weak transcription	Adipose Nuclei	Adipose
17	chr10:97955400-97971800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr10:97956600-97959800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97956800-97958800	Weak transcription	Fetal Intestine Large	intestine
20	chr10:97957000-97957400	Strong transcription	Fetal Intestine Small	intestine
21	chr10:97957000-97964400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:97957200-97957400	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr10:97957200-97958800	Weak transcription	Duodenum Mucosa	Duodenum

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