Variant report

Variant	rs1764305
Chromosome Location	chr10:97892905-97892906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
2	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
3	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:
4	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
5	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
6	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
7	chr10:97843158..97844786-chr10:97891342..97893125,2	K562	blood:

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000266407	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10128368	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1029215	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10509704	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10509706	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10732776	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10748660	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882731	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882732	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882742	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188633	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188634	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188642	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188643	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188655	0.82[EUR][1000 genomes]
rs11188660	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1172937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1172940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172943	0.85[EUR][1000 genomes]
rs1172946	0.85[EUR][1000 genomes]
rs1172958	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1172960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1172961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1172963	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1177749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12766762	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12782206	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1414919	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2446023	0.88[EUR][1000 genomes]
rs3748226	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3762090	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7084542	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97894000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97890600-97894000	Weak transcription	Lung	lung
3	chr10:97890600-97911200	Weak transcription	Gastric	stomach
4	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
5	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
6	chr10:97890800-97893000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:97890800-97893200	Weak transcription	Placenta	Placenta
8	chr10:97890800-97893400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:97890800-97893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:97890800-97893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:97890800-97894000	Weak transcription	Pancreas	Pancrea
12	chr10:97890800-97894600	Weak transcription	Left Ventricle	heart
13	chr10:97890800-97894600	Weak transcription	Ovary	ovary
14	chr10:97890800-97895600	Weak transcription	Hela-S3	cervix
15	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
17	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:97891000-97893200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:97891000-97893200	Weak transcription	HSMM	muscle
20	chr10:97891000-97894600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:97891000-97896400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:97891000-97896600	Weak transcription	Aorta	Aorta
23	chr10:97891000-97906400	Weak transcription	Right Ventricle	heart
24	chr10:97891000-97906600	Weak transcription	Psoas Muscle	Psoas
25	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
26	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:97891200-97893000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:97891200-97893000	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:97891200-97894000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:97891200-97894000	Weak transcription	Fetal Stomach	stomach
32	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
33	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
34	chr10:97891400-97893000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:97891400-97893000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:97891400-97893000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:97891400-97893000	Weak transcription	Fetal Kidney	kidney
38	chr10:97891400-97893000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:97891400-97893200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:97891400-97893200	Enhancers	NHEK	skin
41	chr10:97891400-97893400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:97891400-97893400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:97891400-97893800	Weak transcription	Colonic Mucosa	Colon
44	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
45	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:97891400-97918200	Weak transcription	NHLF	lung
47	chr10:97891600-97893000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:97891600-97893000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:97891600-97893000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:97891600-97893000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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