Variant report

Variant	rs11188655
Chromosome Location	chr10:97947937-97947938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1023331	0.91[CEU][hapmap];0.80[TSI][hapmap]
rs1029215	0.89[ASW][hapmap];0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap]
rs10509704	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10509706	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10736098	0.83[CEU][hapmap];0.82[TSI][hapmap]
rs10748653	0.81[CEU][hapmap]
rs10748659	0.88[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10748660	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10786258	0.81[CEU][hapmap]
rs10786259	0.81[CEU][hapmap]
rs10786260	0.81[CEU][hapmap]
rs10882731	0.90[CEU][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10882732	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10882742	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188585	0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs11188633	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188634	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188642	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188643	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188660	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188663	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1172937	0.81[EUR][1000 genomes]
rs1172940	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs1172943	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs1172958	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs1172960	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs1172961	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs1172963	0.84[EUR][1000 genomes]
rs1177749	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12766762	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12776881	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12782206	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1414918	0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1414919	0.89[ASW][hapmap];0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs1414921	0.84[CEU][hapmap]
rs1414922	0.84[CEU][hapmap]
rs1764305	0.82[EUR][1000 genomes]
rs2446023	0.96[CEU][hapmap];0.97[TSI][hapmap]
rs2484912	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs3748226	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3762090	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7084542	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs7085712	0.81[CEU][hapmap]
rs7099399	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs747259	0.83[CHB][hapmap]
rs7475754	0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11188655	MYOF	cis	parietal	SCAN
rs11188655	GPR120	cis	cerebellum	SCAN
rs11188655	CRTAC1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97947000-97950000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97947400-97949600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
5	chr10:97947800-97948200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:97947800-97949600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:97947800-97949800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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