Variant report

Variant	rs1414921
Chromosome Location	chr10:97779219-97779220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97776829..97779555-chr10:97889274..97891059,2	K562	blood:
2	chr10:97777689..97783074-chr10:97800891..97805801,6	MCF-7	breast:
3	chr10:97777686..97780041-chr10:97782236..97784934,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97778477-97781325	ENSG00000226688.1

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1023331	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1029215	0.88[CEU][hapmap]
rs10736097	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10736098	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10748652	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs10748653	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748656	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10748659	0.88[CEU][hapmap]
rs10786257	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786258	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786259	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786260	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786261	0.85[ASN][1000 genomes]
rs10882710	0.88[AFR][1000 genomes]
rs1172943	0.84[CEU][hapmap]
rs1414919	0.92[CEU][hapmap]
rs1414922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095591	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2446023	0.81[CEU][hapmap]
rs2901892	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2901894	0.82[EUR][1000 genomes]
rs3748224	0.86[AFR][1000 genomes]
rs3762090	0.84[CEU][hapmap]
rs3961945	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145209	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs4918984	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584044	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs6584045	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6584046	0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6584048	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084542	0.81[CEU][hapmap]
rs7085712	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096743	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs7913835	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs7919099	0.81[YRI][hapmap];0.90[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
2	chr10:97774600-97782200	Weak transcription	K562	blood
3	chr10:97777400-97782200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97777400-97782400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:97777400-97787000	Weak transcription	Left Ventricle	heart

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