Variant report

Variant	rs1414919
Chromosome Location	chr10:97833494-97833495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97829922..97834594-chr10:97848296..97851749,4	K562	blood:
2	chr10:97824314..97827004-chr10:97832805..97834413,3	K562	blood:
3	chr10:97831238..97834189-chr10:97888869..97893291,4	K562	blood:
4	chr10:97803319..97804941-chr10:97831470..97833697,2	MCF-7	breast:
5	chr10:97829963..97833632-chr10:97888619..97891681,4	K562	blood:
6	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
7	chr10:97831034..97837353-chr10:97838908..97844842,8	K562	blood:
8	chr10:97831211..97833750-chr10:97833757..97836431,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10128368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1023331	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs1029215	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10509704	0.84[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10509706	0.84[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10732776	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736098	0.92[CEU][hapmap];0.95[TSI][hapmap]
rs10748653	0.88[CEU][hapmap]
rs10748659	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10748660	0.84[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10786258	0.88[CEU][hapmap]
rs10786259	0.88[CEU][hapmap]
rs10786260	0.88[CEU][hapmap]
rs10882731	0.81[CEU][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882732	0.84[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882742	0.89[ASW][hapmap];0.84[CEU][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap]
rs11188585	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11188633	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188634	0.89[ASW][hapmap];0.84[CEU][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188642	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188643	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172937	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1172940	0.83[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172943	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1172946	0.95[ASN][1000 genomes]
rs1172952	0.92[ASN][1000 genomes]
rs1172953	0.81[ASN][1000 genomes]
rs1172958	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1172960	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172961	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172963	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1177749	0.89[ASW][hapmap];0.84[CEU][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12766762	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1344356	0.97[ASN][1000 genomes]
rs1414918	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1414921	0.92[CEU][hapmap]
rs1414922	0.92[CEU][hapmap]
rs1624551	0.90[ASN][1000 genomes]
rs1764305	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2446023	0.88[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs2484912	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs2901894	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3748226	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3762090	0.89[ASW][hapmap];0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918984	0.85[CEU][hapmap]
rs6584048	0.82[EUR][1000 genomes]
rs7084542	0.89[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7085712	0.88[CEU][hapmap]
rs7099399	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7475754	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7901611	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1414919	CRTAC1	cis	parietal	SCAN
rs1414919	GPR120	cis	cerebellum	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
3	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
4	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
5	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
6	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
8	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
10	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:97819600-97848000	Weak transcription	HepG2	liver
14	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:97819600-97849400	Weak transcription	Ovary	ovary
18	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
19	chr10:97819800-97841400	Weak transcription	Liver	Liver
20	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
25	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:97822400-97834600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:97822600-97841800	Weak transcription	Adipose Nuclei	Adipose
33	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
35	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:97822800-97833800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
39	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr10:97823200-97833800	Weak transcription	Dnd41	blood
41	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
44	chr10:97825800-97834400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:97825800-97848200	Weak transcription	Fetal Intestine Small	intestine
46	chr10:97831200-97836200	Enhancers	K562	blood
47	chr10:97831400-97834800	Enhancers	HUVEC	blood vessel
48	chr10:97832000-97834000	Enhancers	Hela-S3	cervix
49	chr10:97832000-97835400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:97832400-97834000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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