Variant report

Variant	rs1172963
Chromosome Location	chr10:97883160-97883161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97882072..97884554-chr10:97924471..97926244,2	MCF-7	breast:
2	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
3	chr10:97882793..97884794-chr17:59472049..59474329,2	MCF-7	breast:
4	chr10:97843811..97845627-chr10:97883061..97885874,2	K562	blood:
5	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10128368	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1029215	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10509704	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10509706	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10732776	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10748659	0.94[ASN][1000 genomes]
rs10748660	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882731	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882732	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882742	0.80[EUR][1000 genomes]
rs11188585	0.93[ASN][1000 genomes]
rs11188633	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188634	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188642	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188643	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188655	0.84[EUR][1000 genomes]
rs11188660	0.80[AFR][1000 genomes]
rs1172937	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1172940	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1172943	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172946	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172952	0.98[ASN][1000 genomes]
rs1172953	0.87[ASN][1000 genomes]
rs1172955	0.83[ASN][1000 genomes]
rs1172958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172960	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1172961	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1177749	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12766762	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12782206	0.82[EUR][1000 genomes]
rs1344356	0.93[ASN][1000 genomes]
rs1414918	0.92[ASN][1000 genomes]
rs1414919	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1624551	0.92[ASN][1000 genomes]
rs1764305	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2446023	0.90[EUR][1000 genomes]
rs2901894	0.94[ASN][1000 genomes]
rs3748226	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3762090	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084542	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7099399	0.91[ASN][1000 genomes]
rs7475754	0.94[ASN][1000 genomes]
rs7901611	0.90[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97879000-97883200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97879200-97883600	Weak transcription	HepG2	liver
3	chr10:97879400-97883800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:97881600-97884000	Enhancers	Hela-S3	cervix
5	chr10:97882000-97883800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:97882000-97884000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:97882000-97884000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:97882600-97883400	Enhancers	HUVEC	blood vessel
9	chr10:97883000-97883600	Weak transcription	A549	lung
10	chr10:97883000-97884000	Weak transcription	NHEK	skin

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