Variant report

Variant	rs10128368
Chromosome Location	chr10:97837459-97837460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97835230..97837611-chr10:97890300..97891824,2	K562	blood:
2	chr10:97835106..97837949-chr10:97848994..97851242,3	MCF-7	breast:
3	chr10:97835608..97838273-chr10:97904021..97906835,2	K562	blood:
4	chr10:97825601..97827985-chr10:97835261..97837879,2	K562	blood:
5	chr10:97824438..97827083-chr10:97837081..97839051,2	K562	blood:
6	chr10:97833877..97835532-chr10:97836303..97838930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1029215	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10509704	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10509706	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10732776	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748659	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748660	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882731	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882732	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188585	0.99[ASN][1000 genomes]
rs11188633	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188634	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188642	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188643	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172937	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1172940	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172943	0.97[ASN][1000 genomes]
rs1172946	0.97[ASN][1000 genomes]
rs1172952	0.94[ASN][1000 genomes]
rs1172953	0.83[ASN][1000 genomes]
rs1172958	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172960	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172961	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1172963	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1177749	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12766762	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1344356	0.99[ASN][1000 genomes]
rs1414918	0.98[ASN][1000 genomes]
rs1414919	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1624551	0.92[ASN][1000 genomes]
rs1764305	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2446023	0.80[EUR][1000 genomes]
rs2901894	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748226	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3762090	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6584048	0.82[EUR][1000 genomes]
rs7084542	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099399	0.97[ASN][1000 genomes]
rs7475754	0.98[ASN][1000 genomes]
rs7901611	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
2	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
3	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
4	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
5	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
8	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:97819600-97848000	Weak transcription	HepG2	liver
12	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:97819600-97849400	Weak transcription	Ovary	ovary
16	chr10:97819800-97841400	Weak transcription	Liver	Liver
17	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
21	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:97822600-97841800	Weak transcription	Adipose Nuclei	Adipose
27	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
29	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
32	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
36	chr10:97825800-97848200	Weak transcription	Fetal Intestine Small	intestine
37	chr10:97833800-97841400	Weak transcription	Primary T cells from cord blood	blood
38	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:97834000-97849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:97834000-97849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:97834600-97840200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:97834600-97849000	Weak transcription	HSMMtube	muscle
43	chr10:97834800-97847600	Weak transcription	Dnd41	blood
44	chr10:97835000-97849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:97836400-97849200	Weak transcription	Thymus	Thymus
46	chr10:97836800-97837800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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